Detailed information of gene07371.t1 in Actinoscyphia liui

Genomic Location: chr2:46229129...46251285
NR annotation: PFX26436.1, Fibropellin-1 [Stylophora pistillata]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O18733Matrix metalloproteinase-9 OS=Canis lupus familiaris OX=9615 GN=MMP9 PE=2 SV=2
P3343672 kDa type IV collagenase OS=Rattus norvegicus OX=10116 GN=Mmp2 PE=1 SV=2
P5075772 kDa type IV collagenase OS=Oryctolagus cuniculus OX=9986 GN=MMP2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000377 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00040
all species →		fn2Fibronectin type II domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan
PF01822
all species →		WSCWSC domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000562
all species →		DomainFibronectin type II domainInterproscan
IPR013806
all species →		Homologous_superfamilyKringle-like foldInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR051666
all species →		FamilySeminal Plasma Capacitation RegulatorInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR036943
all species →		Homologous_superfamilyFibronectin type II domain superfamilyInterproscan
IPR002889
all species →		DomainCarbohydrate-binding WSCInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22918
all species →		SEMINAL PLASMA PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0008201
all species →		Molecular Functionheparin bindingInterproscan
GO:0009986
all species →		Cellular Componentcell surfaceInterproscan
GO:0048240
all species →		Biological Processsperm capacitationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene07371.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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