Gene detail

Detailed information of gene07642.t1 in Actinoscyphia liui

Genomic Location: chr2:50759875...50764820
NR annotation: XP_020914822.1, ribosome maturation protein SBDS-like [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DIT8	Ribosome maturation protein SBDS OS=Xenopus tropicalis OX=8364 GN=sbds PE=2 SV=1
A5D8M6	Ribosome maturation protein SBDS OS=Xenopus laevis OX=8355 GN=sbds PE=2 SV=1
Q9Y3A5	Ribosome maturation protein SBDS OS=Homo sapiens OX=9606 GN=SBDS PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008539 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20268 all species →	SBDS_C	SBDS protein, C-terminal domain	Domain	Interproscan
PF09377 all species →	SBDS_domain_II	SBDS protein, domain II	Domain	Interproscan
PF01172 all species →	SBDS	Shwachman-Bodian-Diamond syndrome (SBDS) protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002140 all species →	Family	Ribosome maturation protein Sdo1/SBDS	Interproscan
IPR037188 all species →	Homologous_superfamily	Ribosome maturation protein Sdo1/SBDS, central domain superfamily	Interproscan
IPR018023 all species →	Conserved_site	Ribosome maturation protein SBDS, conserved site	Interproscan
IPR039100 all species →	Family	Ribosome maturation protein Sdo1/SBDS-like	Interproscan
IPR036786 all species →	Homologous_superfamily	Ribosome maturation protein SBDS, N-terminal domain superfamily	Interproscan
IPR046928 all species →	Domain	Ribosome maturation protein SDO1/SBDS, C-terminal domain	Interproscan
IPR018978 all species →	Domain	Ribosome maturation protein SDO1/SBDS, central domain	Interproscan
IPR019783 all species →	Domain	Ribosome maturation protein SDO1/SBDS, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10927 all species →	RIBOSOME MATURATION PROTEIN SBDS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042256 all species →	Biological Process	cytosolic ribosome assembly	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14574	SDO1, SBDS; ribosome maturation protein SDO1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.