Detailed information of gene07724.t1 in Actinoscyphia liui

Genomic Location: chr2:52608871...52616229
NR annotation: CAB3998239.1, Transposon Ty3-G Gag-Pol poly [Paramuricea clavata]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99315Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q8I7P9Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000002 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665
all species →		rveIntegrase core domainDomainInterproscan
PF13650
all species →		Asp_protease_2Aspartyl proteaseDomainInterproscan
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050951
all species →		FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584
all species →		DomainIntegrase, catalytic coreInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001995
all species →		DomainPeptidase A2A, retrovirus, catalyticInterproscan
IPR021109
all species →		Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR036397
all species →		Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043128
all species →		Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984
all species →		PROTEIN CBG26694Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015074
all species →		Biological ProcessDNA integrationInterproscan
GO:0004190
all species →		Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508
all species →		Biological ProcessproteolysisInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene07724.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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