Gene detail

Detailed information of gene07849.t1 in Actinoscyphia liui

Genomic Location: chr2:54584185...54598962
NR annotation: XP_020914818.1, intraflagellar transport protein 20 homolog [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene07849.t1

ATGGCGGATGCTAACGAAGGTTTTTATTTTGATGAGTTGAATAAAGTACGCGTTTTAGAGCCTGAAGTGAGCCAAGAAACCACTAAACTGAAAGAAGAATGTAAAGAGTTTGTGGATAAAATAAACGAGTTCCAGAAAATAGTTGGTGGATTTATCGACATGGTTGATTCTCTGGCGAAAGAAGTCGAAAAAGAAAAAATGAAGGCCATTGGCTCTAGGAATTTATTAAAATCGATAGCTAAGCAAAGAGAGTCCCAACAACAGCAACTCAGAGCTTTGATCGCAGAGAAAAAAACTCAACTGGAAAGGTTTAGGTTACAACATGAATCCCTCCAAAAAGTAGAAAGTGAGCAGAATGAATTTATTGAACAATTCATTTTACAGAAATGATTATTGATGGAATAATCTTGGGTTGCATATGTTGATGGTTCACAGCAAATACTTTCTACATGCTAGAGACCACTAAACTGTTTAGTTGAAGTGAATTGTAAATGCACTGGTCTCTTCGTTTTCCTTTTGGTTGCATGGGGAATGTTTGTTATCAACAGTTGTCATTCCTTATTATTTATTACTCATTGCTGTGATTTGCTGTACCAACAGTGCATTCAGAGGTAGACTGCAGCTTCTTTCTTTTCAAGTATTGTGAGGGTCCACAATAGGTTTGGCGGGATGCGGGATCAGACTTATTTTGGAGGTGGGATTTGGGATGGCAGCTATTGAATCAGAGCGGGATATGGGATTTCCATTATGAGCGGGAGCGGGATTTTATGTTTTTGAGTGGTCAACTGTAAATAAGGGCGGGATTTACAGCAAAAATGAGCGGAAAACCGGGATCTGAAAACCCCTATAGAGGCTTTGCACGGTCACGTGTCGGCGGCCATGACAGGAGGCAGGAACAATAAAATCGTTTTGCATTAGAAAGAATCCAATCCTCAGGGGAAAGAGATTTTATTATTCCTGTCGCGGTTTGGTACTTCATGTAAGACCTCATGAATTGGCACTATTATATTACATATTGTTAACTATGTAGAACAATAGAAAGAACATAATAGTGCCATTGTGTGGAGTCTTACATGAAGTAGCCTCGTCCCCTGTCATGGCTGGCGACATGTGACCGTGCAAAGGCTCTATTGTGGACCCTCTACTGTCTCTTGGTGTGTTAAAATGATCATAGTAATTCAGTGGAATATGTATTCTTACTAACACATTAGTGTGTTAAAATGATCATAGTAATTCAGTGGAATATGTATTCTTACTAGCACAGTGTGTTAAAATGATCATAGTAATTCAGTGGTGATAGAGAACAGTTAATGGTACATCGTGTTTTGGGATTTCCTAATTGTGCCTTGCGCATATCTCATACAATGTAAATATATGCTTTAAGAACAAATCAATAGTCTATATTCCAACAGCAATTTTATTTATACACTGATTATAAATACCTTAATAATTTAAGAGAAAATTCTAATTTGTAAAATTTTTTGTAATGATAGAAAACACCAGCATTTGTTGTGTTCAATTTAAGGTGATTCCATCGTTTCGCATTGCGCACGCTTACTGCGCACGATTCTCTAGCTCGCACGAGCTCGCGCACATTTGAGATCGCTAAATTTTCAAGATGGCAGCTATTCTCCTTCCCAGAGATACCCACAATTCTTCACGATTTGCGCGTGCAAACGAGGTCAGGGTAGAAAAATATTAGAACAGCATTGGGGATATTGAAAGAATTCAACTAAATTCAATGGAAAATGAGTGTATTAATCACAAATTCTGACGTAAATGCGTACGAAAGACTGCAAAGAACATTTCTGAAGTTAAAGCTACTTCTAATTCACTACAATTGACGTAATTCTTTAAAAAATGTGACAATTTCTTGATCATTTACGATCATTTGTTAATATTTTCTACCCTGACCTCGTTTGCGCGCGCAGAATCGTGAAGAATTCTGGGTATCTGTGGGAAGGAGAATTGAGATAAACCACAGGCAGCCCAAGCAATGTTCTTGTGAGGTTTTAGCAGTGATTCTATGTGGTTCTATAATGTTAGCGAAAATATCAAGTCAGCGTCAATAAAATGGAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61025	Intraflagellar transport protein 20 homolog OS=Mus musculus OX=10090 GN=Ift20 PE=1 SV=1
Q66I67	Intraflagellar transport protein 20 homolog OS=Danio rerio OX=7955 GN=ift20 PE=2 SV=1
Q58CS6	Intraflagellar transport protein 20 homolog OS=Bos taurus OX=9913 GN=IFT20 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008713 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14931 all species →	IFT20	Intraflagellar transport complex B, subunit 20	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028172 all species →	Family	Intraflagellar transport protein 20	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31978 all species →	INTRAFLAGELLAR TRANSPORT PROTEIN 20 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0051642 all species →	Biological Process	centrosome localization	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16473	IFT20; intraflagellar transport protein 20	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.