Gene detail

Detailed information of gene07868.t1 in Actinoscyphia liui

Genomic Location: chr2:55015029...55054223
NR annotation: XP_031551084.1, unconventional myosin-XIX-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene07868.t1

ATGAAGTACAAAGACATCAATCAAAACAGCAAAAGTTCTGTACAACATGGAATCAACAAAGACTGGATTACTGACAGACCTCACCAAGTGAATGTGAATGATTTAACAACGTTAAACCCACTTAAAGAAAACACTGTTCTCCAATCAATTGAAGAGAGATTCAAGGCTGGTACCTACTACACTTGGGCTGGAATTCCTTTGGTAGCAATGAATCCATTTCAAGATATTGATGAATTATATGGTGAGGAAATGGAAGACAAGTACAAGATGAGAAGTGCAGTCACAACAATGGTAAATATAATGGGCGTAGTAGCTAAGGAGCTCCCACCCCATATCTTTGGTATCGGACAAAAGGCATATTGTGATTTAAAGAGAGGATTTGAAACATCCAACCAATCCATCATTGTCAGTGGAGAGAGTGGTGCAGGAAAGACATCAAATACTGTGGACTTATCTAACAACTCAGATGCTGTGACCGATTTCTCTTCGACAACGCTAGAAGCACTACAACCATTGAAAAGATCCATTAAAGACAATGATATCTCCATAGCCCATATAAACATACGAGGCCTAATCAAACATCTTCCCGAAGTCAAAATATTGCTGCAACATACTCCAGTTGATTTCCTGGCAATCACCGAAACACATTTAAACGCTGATATCGAAGACAACGAAGTATTTATCAACGGCTACATTGTCATACGGAAAGATAGACCGAACGGTTCTCCCTGGGGAGGCTGTGCTCTTTACAGCAAGGAAAACCTGGACGTCCAGATAATTAATAAGTACATGTCTGATGAAATTGAAGCAATATGGGCTGAACTCTTGCTGAACTCGCAACGTTTATTAATTGGTTGCATCTACAGGCCACCGGATGATCTCTCCTTCTACAATAATTTTGAAATAACACTTGACAAGATACGGTCCACGCGGAAAAACTTCCTGATAACTGGTGACTTGAACTCTGATCTATTCAACAAAAGTAAACCTGGCGAGATGAAAACATCTGGAAAAAAACTAATCAAAATTTTACGATCCAATAGTTGCAAGAACTTAATAACCAAACCAACAAGAGTTACTGAATCAACCAAATCAATCATTGATCTCATTATAGTCAACAACCGTTCCAAAGTCAAAAGCTCTGGTGTTTTGGATCTTAGCATCGCAGACCACAAGCTCGTCTACGCAACACTCAAACTCAAGTCTAAAAATCCTAAACCCACAATTAGACCAGTGCGGGATTATAAGAAATTTGACAGGAAAGCCTTCCAAAAAGCCCTAAGAGACACACCATGGTGGATATCTTCCGTCTTCGACGATGTAGACGATGTCGCCAATACCTGGGAATTACTCTTTAAAGAAACCATTGATACGCACATACCCACCAGAATGGCCAAAATCAGGAAAGAAAGTTTACCTTGGGTTAATGGAGAAATAAGAAAAGAAATGAACAAGAGATATAAATTACTTAAGAAATGCGACGGCTCTGAGAAGACTTCAGCCATCTGGGTGGAATACAAGGAATCCAGAAATAAAGTTGCAATGATGTTGCGTAAAGCCGAAGCTCAATATTGGCATGAGCAATTCAAGAAAGCAAAGAACCCGCAGGATTTCTGGAAATTAGTAAACAAGGTTCAGGGTAAAAGTCACAAAAAACATAAAAGAATTGGCCCGTTACAACATCCCGGCTCCTCAGCTGTCATTACTGAAAATACTGATAAAGCTGAACTGATCAATGACTTCTTTGTCAACGTTGGGAAACAACTTGCTGAAGACTTCTGCCCTAACCACCAAGAAAGTAAAACAGAGTTAATTTACAGAGTATCTCCAACTATGGACATCACCTGGACGACGAGAACTCTGATGCAGTTTATCTCAGATATTGCAGGGAAAAGTGGACGTGATCGTGTTTCCAGTATAGAACAACGTATTCTAGATTCCAACCCCGTCCTCGAGGCGTTTGGTAACGCTTGTACACTGCGTAACGACAATAGTAGTCGTTTTGGAAAGTACATACAGCTACAGTTTGACAGAGAGAATCACATCGTGGGTGCTAAACTGAAGACATATTTGTTGGAGAAAACCCGTGTTGTACATCACGCTGCTGGAGAGAAAAACTTCCATATATTTTACCAGATGTCATCAGTTGCTGACGATCAGAAATCAAAGCAAAGAAGACGATCTTCTAGATGGGGAGGCGAAGACAGACAAGCATTCCTTGAAACATGCAATGCAATGAGAAACATTGGAATACAACACGACCTACAGACAGAAATTTTCAAGGTCCTCAAAGGAATTCAGCGAATTTGTAAAGTTTCGTTTAAAGATGAACAAGACGAACTTTGCAGCATCAACAATCCCAAGACAGCTCACGATGCGTGTAATCTACTGGAACTGGACGAACAGAAGTTCAACAAGTCCATGACTACTAGACGAATAGTAACAGGTTCTACACAAGAAGAGTTTTTAAAACCTTGCTCTCTTGAAGAATGTATTTCCAGGAGAGATTGCTTGGCAAAGCTTATTTATGCAAGGTTGTTTGATTGGATCGTGGACTTCATCAACACCAGTATCAAGGCTCCCAGACATTCCAAACACGCATTTATAGGTCTACTTGATGTGTATGGGTTTGAAAGCTTTGACGATAACAGTCTGGAGCAGCTGTGCATTAACTACGCTAACGAGAAACTACAACAGCATTTTGTTTGTCACTTTCTGAGAAAACAACAAGATGAGTACCAGAAAGAAGACATCGATTGGATTTTCCAGGAGTTTTGTGACAACAGGCAGTGTTTGGACATCATCGAAGGACGAGTTAGTGTGTTTTCACTCATGAATGAAGAATGTAGGCTCAATAGAGTGGTTGACGACCAAGGGTTTACTGATCGACTCAGCTCGGTGTTGGGGCAAAATAAACATTTTTCTCGGCTTCGTTTGAAGAGCCAGCGATCAGAGTTCATAATACACCATTACGCTGCCAGCGTGGCTTATCAGGTTCATGGGCTTACTGAGAAAAACAAGGACCACACAGCTCCAGAAGTGATGGAAATTCTTCAGTCCAGCAACAATTCGTTCTTAAGACAACTATTTGAAAAACACAACAAAGAGGTTTGTAAGACCAAGCATGGCAGTGGTATGACTATCAAGCCTCCTCGACCCTCTAATGTCACTGTTGTTAGTAAATTCAAGGCATCGTTGGATAAACTCATGTGTACGTTGACATCTACTAATGTTCACTATATACGCTGTGTACGACCAAACACGATAGGTGCTCCAAACCTCTTCGATAGAAACCAGGTTCTGAACCAGCTACGCTCTTGTGGTGTCATGGAAACCATTAAAATATGTGCAGCTGGTTATCCAATCAGGTTAACACATCGAGAGTTCATTAACCGATATAACTTTGCAGTAACACATGATAAACCACGCCTATCAGCCACACCCAACAAGTCGTTCCACTCGCCATGCTGTGCGTCCGACTCTCCTTCACTCGTCTCTATCAACAGACTCAAGAAAGCAGATCGACGCGCGAAACGACGAAAACGAAGCGGTTACGACCACACCCCGAGTATCTGCCGATCGATACTGCAAACGATTGGCTGTATTGTTGATGACGACAAAGAAAACAGTTCTTCGTCTATTGCTTGTCCTGGTTTTAAGCTTGGTCGCACCAAGTTGTACTTGCGCGAAGAAGTTATTGAGGAGCTTGAGAAATCACGAGCTCGTTACCAATCCCGCTCTGCATTCACGATTCAGTGTTGCTGGTGGCGGTACAAGAAACGTCTTACTACCACCACACAGAACCACGCAGCTGCGCTGATACACAAAGTGGTGAAAGGCTGGTTGGCTTGGAAGAGATACCGTGCAATGAAGAGAGCAGCTTTGATTCTTCAAAAGCATCTCAGGTGTTTCTTACTAAGGAAGGAGAGATTCGCCGAGGTCGTAGCACAAGATCCTGTGCACGAGGTATTTATACCTAGAGAAGAAGAAATCTCTCAACCCTGCCATGTGCCACTACACATTGACACAGCACTTATACCTAGAGCAGAGGAAATCTCTCAACCCTGCCACGTGCCACTACACATTGACACAGCACTTATACCTAGAGCAGAGGAAATCTCTCAACCCTGCCATGTGCCACTACACATTGACACAGCACTTATACCTAGAGCAGAGGAAATCTCTCAACCCTGCCACGTGCCACTACACATTGACACAGCACTTATACCTAGAGCAGAGGAAATCTCTCAACCCTGCCATGTGCCACTACACATTGACACAGCACGACCACTCCCTACTTGGTTCGCGCCATTTGTACCACGTGGGTATGGGTCACTACTAGTGAAGAAACCACAAGATATCCAGCACAACATCGAGATGAATACTATACACCGCAGCTGTGGTATTGCGTCTAGGAGAAGAATTGAGCAAACGCCTGTCATTTTTCACATTCGGAAGACACCTTTGACAAATGCAGAACGGCGACCACTTGAAGACAAGCTATCGAATGAGGAATGGGCTGTCCTATCCGTTTGTGATGAATGA

Transcript

gene07868.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q569U0	Unconventional myosin-XIX OS=Xenopus laevis OX=8355 GN=myo19 PE=2 SV=1
Q5SV80	Unconventional myosin-XIX OS=Mus musculus OX=10090 GN=Myo19 PE=1 SV=1
Q96H55	Unconventional myosin-XIX OS=Homo sapiens OX=9606 GN=MYO19 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13140 all species →	MYOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030050 all species →	Biological Process	vesicle transport along actin filament	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene07868.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.