Gene detail

Detailed information of gene07938.t2 in Actinoscyphia liui

Genomic Location: chr2:55990661...56023328
NR annotation: XP_020912021.2, centrosome and spindle pole-associated protein 1-like isoform X2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene07938.t2

ATGCCAATTGTGCTCATCATTGATGGGATGGCATTAATACAGAAGATGAAGTTTGCAGGTGGAGCAACATTTGGTGGCATGGCATTGAAATATTACGAAGTTATGACCAATAATTATCAACATTGTCATCTAGTAGACGTGGTCTTTGACCAGTACTGGGATAATTCAATCAAGGCAGGAAAGCATAAGAAATGCAGAGAAGCAAGTGGTCTGGAAGTAAAGATTCATGGTTCATCCACAGTAGTAGCTAAGCAGTGGCCTAAGTATATTTCCAACGTGAAGAATAAAATCACCCTTTGCAATTTCCTTACAGAAGAATGGTGCATAATCGGAAAACAGCAAATGCCACTCAACAAGGAACTTTTCATTGGAGGGGGTATGAGAAACAGAGAACTTGTCTCCATCAGGAACAGTGAGATTAATTTTGCATCAAACTCTGACCACAAGGAAGCAGATACCAGGACTATTGCACGCAATGCATACCAGTCGAGATGCACAAAACGAAGGATGAGATTCAGTCACCAGATACTGATGTCCTTTTTCTCTGTCTCTCTGACTATTGGGCAAATGAAACTTGTTAGTAGAAACTACAAGTTCAACTCAAGAAGTGATGGTGTTCTAGCACGTCGATATGATGAGGATGAGGATGATGAAGTTGGATATGGCAGGCAATCTAGAAGAAGAAACAAGAACATTGAGTCCAAGCGGGTTAGATTTCATGATGATGATGATGATGACATGATTGACAGCTCCTGGTCAAGACCACGTCGACGACTTGTAAATGATGATGATGATGATGATGATTTATATGATACAATTGATAAGCTTCAGAGGCAATCACGTAGAGACAGAAGGAGAAACAGTGCTCATGAGGAAAGAACCATCAACCATCCTCCTATTGCTGAAGATTCAGTCAGAAGAACAAAAACTGAAAATGAACTCAGGTCTAATTCTGCACCATTGTTAGAAGGAACTGGAATCATTGGAGGTAGCCATGTGGAGACAAGGGAAATGAAACTCAAGAAACAAGACAAGTACAAGAAGGAACTTGAAAAACAAATGAAATTAAGAGAAGAGAACAAGAAAAAGGAGAAGATGGAAAGATTAGGTGAGACACCTGGAGGCTTTGACACCAACCATCAACATCATTTAGCAACCAGAGCATCAGAACAACCAGTACCAAAACACGCACCACACAACATCTCTCCTGGTAATTATGGTTCTAGACCTCCTCAACATCCATCACTATACCCAAGTCCTTATGATGACCCTTACTACAGCTATAATTATGGAACTCAAGAACCCGGTGAACGTACAGCAACAGCACTACAAGAACCTTTGTTTAAAGGTTCTGGAACACCAGGGCTCTTTGACACTGATTACAAACAAGACCACCAAGAAAGAAGAAGAAAAATAGACTTTGCACCAGCTCAAGCAGGTCCTCCAAGACAGTCACCAACAGGTGATCACATCCATCAGCCACCAGGGGGCTACAGTAACATAGGCGGAGTAGGTGTGACCAGTATTGGGCAAGTCAGTCCAGATGCTGATAGTATACAGAAAAAGAGAGCCGTACAACAAGCATATCAAGAAGAACTCAATAAACAGGTGGAATTGAGAAATAAACAAAAGAAAAAAGAAAAACAAGAAATAGAAAGGTATGATAGAAGGCTAGAAGAAGAGATGGCGAAGTATGACCCATGGGGTAAGGGGGGTGCTGGTGCACCCCTTAGAGATGTAGCTACAGGACAAGTTATAGCTGATCTTCGTGGGATGCACCATGATAGTAATACAGACGACAGGAAGTCTGTCAATCTAGAGATAAACCCTTCAGCAGCTGTTGATGTGTCGTCACCACGCCCTGACTACCAAACACCACAACCACCCCGTAACTACCAGCCATCAGGCTATGAACCATCAAGCTATCAATCACCTGCATCTGTACCACAACAAGGTAATGCAGGGTCAAATTCTTCCCCTTATGGACGATCAGACCCTTTGAAAGAACGCCAGCCTCATGATGATTTGAAAGAAAAAGCCAAACATGATTATCAACACTTTCTTAAACTACAAGTGGAGGAGAAAGAAAGACAGAAGAAGGAAGAACTGGACAAAATTAAAGCAGAGGAAGAAAAGGAGGAAAGGAGACTACAGGAGCAACGTGACAAAATGCAAAGAGAGTACCTGGAAGAGCAAGAAAAAATGAAGAAAAAAGAAGAAGAGTTGAAAAAACAAAATGAGGCAATTGTGGAAGCACAAAATGCCAAAAAACAAGAAGCGGTGCGCAAGAAGAGAGCAATGGAGGACAAAAGACAAGAAGAACTCCACAAGAAACTTGAAGAGGAAATGGCTACCAAGAAATATGCAGGAGCAGCAAACTTTAGGGGCAATTCTCCTCCCATACCAACCATGCGTAAACAGGTTGATAACATTACTGCATCAGATCGACGTAACATGAACTCCCAACCAGTGCCAGCACTAGCAAATCAACAACAACAAGATTCATCACTGCCATCTGCTAAACCTTCATCACCTGCCCTATCTACTGTTACTTCAAGACTACCATCAGGTGGACCCAGTAGAAGTCAAGCTGAGAATGATGTTCTCAGTCAATTGACAGCTCTAAGACAACAGCTAAAACATGAAGAACAAAAAGTACAATCACAGATTGGACGACCAGCTGCAATGAACAAGTATTCCCAGATGAACAGAACTGAAAATGAAAGCAGAAGGAGTAAGAGGGATGTCAGTGTGTTTGATAGAGCCCTTACTAATAAACCTGCAGGAACTGTTAGAAAAGCAGAACCAGATCCTTACTCTGCAGCTGATGAGTTCAACAGAATCAAACAAGAAGAAACATCATCTTTAGCAGGAGAATTTAGAAGCAGATTCCCCCAACCAGCTACCAGTGATAGTATGCTAGATTTACAGCAGCAAGAGTACTTGAGAGAACAAGAAGATAAAATTTCATCTTTAAGGGCTGCTGTCATGATGATTGAAGAAATATCAGGAGATAGATTCATTGAAGGGATTGGGGATCTGTGTGTTCCCGTCGGAAGAGTTAACCCATTAACATTGTTAGAAGCACTAGCGACTGCAAAAAGACTTGAAGCATCGCGTCAAGTAGAGTCAGAAATCAGAGCAGTGAATGTTCAGTCAGTTTATAGTACACAGAGTAAACCACACACAGCCAACAACCAAAATTCTAAAAGGAGCATGGAGTGTTATAAGTGTGGAAAGATGGGACATATAGCGAAAGAATGCAGGAAAGATGTCAAGTGTTATAACTGTCAACCAAAGGAAAGGGGGTCAACCCAACATGAAAGTAAACCATCAGAGTCCTGTTCATCTGTACAAGCTAAAAGTATGTCCATTGAAGTCTTAGTTGATACCAAGAATGTAAAAGCTTTAATAGACACAGGAAGTACCATTTGTCTTATCCACCCCAGTCTGCTTAAAGACATGTCAGTTAGCACAGCCAGGACATCCTGTAAGAAATCAGCACGTACAGCAGGAGGAGATGCACTGCCCTTGGAGGAGGAAATCCAATTGAATATCAAAATAGGAGGGAAGTTTTACACACAGAATTTTGACATTGCCAAAGTTGTATCAGATATGATTATTGGAGTTAACTTTCTGAAACAGAATTCAGCAGTTATTGACTTGCCTAACAATAGACTGTGCATTGGAACTAAGCACTGTAAGCTGTCAGTGAATTATGGTGATGAGAACTATAGAGTCGGTGTATAG

Transcript

gene07938.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2RX88	Centrosome and spindle pole associated protein 1 OS=Mus musculus OX=10090 GN=Cspp1 PE=1 SV=2
Q1MSJ5	Centrosome and spindle pole-associated protein 1 OS=Homo sapiens OX=9606 GN=CSPP1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003235 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF13650 all species →	Asp_protease_2	Aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR026708 all species →	Family	Centrosome and spindle pole associated protein 1	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21616 all species →	CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0032467 all species →	Biological Process	positive regulation of cytokinesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene07938.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.