Gene detail

Detailed information of gene08043.t2 in Actinoscyphia liui

Genomic Location: chr11:259658...291228
NR annotation: XP_020900805.1, CUGBP Elav-like family member 3-A isoform X1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene08043.t2

CTTTTGTCGTGTTGTAGTGTGTTTTATTTCTGCTTTTTCGCTTACAAAGTAACCTAATATGGACGCTAAACCCACTACGAATGGTGTGGGAATGTCTGGAAGGGAGCCTGGCGCCGTCAAACTGTTTATTGGGCAAGTTCCCCGGACCTGGGAAGAGAAAGATTTGCGGCCAATCTTCGAGACGTTCGGGCCTATCCACGAACTGACTATTCTAAAAGACAAATTCACCGGCAACCACAAAGGATGTGCTTTCTTAACGTTCAGTAACAGAGAAGCTGCCGTCAACGCACAGCAAAAATTACACGAAAAAAAGACGTTACCTGGGATGCATCATGCAATACAAGTGAAACCTGCTGATAGTGAAACAAGATCAGAAGACAGAAAGCTATTTATTGGAATGATAGCCAAGTCTGCTAAAGAAGATGATGTTCGTATCATGTTTTCTCCATTTGGTACAATAGAAGAACTTACAATATTAAGGAACTCAGATGGCTCTAGTAAAGGCTGTGCGTTTTTAAAATACAGTAACAGAATGCAGGCACAAAGTGCAATAGCGAACCTGCACAACAGTAGGACCATGGAGGGTTGTTCGTCACCAATGGTTGTAAAGTTTGCTGATACTGAAAAAGAAAAGTTACAAAAGAAGATGCAGCAAGTGGCTACATTTGGCGGGATGACATTTGGTAATCCTACAACATTCCCTATGGCTTATGGAACCACTCTGACGCAACAGGTACAGCTTCAACAGGCAGCCAATGCAGGAATGCAGCCTGCAGGTTTTAATATGATGTCAGGCATGAATCAAATGCTTCAACCAGGTAGTCTTGGTGCTCTAGTCGCTGCAACAGTAATGGCACAACAACAACAACAACAACAGCAACAACAGCCACCAGGCGGTATACAGAGTAGTATGACTAGTGGAGGCTCTACTGGTGGTATGACTAGTACAGCCAATACTGTGTCTAGTGCTTCGCCTATGAACCTTGGAGTACAGGCAATGCAGGGTATACCTGGATTAGGCATGAATGTTTCTGCAGGAAGCCCTGCTCTTGCATCGTTAGGAATGTCCAACATGAGTGGATTAAGTGGTGTTAACAGTCTATCTGGTAATTCAGTGGATGCCTTGTCACAGGCTTACTCTGGTATACAGCAGTATGGTGCAGCATTCCCAACAGTCTATAATCATGCTTTATATCAACAACAACAAACTCGACAACCACAGAAAGAAGGACCAGATGGATCTAATTTATTTATTTATCACCTGCCGCAAGAGTTTCAAGATGCTGATCTATTGCAGATGTTCACACAATTTGGTAATGTTGTAAGTGCTAAAGTATTCATTGACAAGGTCACTAATACAAGTAAATGTTTCGGTTTTGTAAGCTATGACAACGCACAGTCAGCAACAAATGCCATCCAGCACATGAATGGTTTTCAGATTGCAACCAAGAGGCTTAAAGTACAGCTAAAAAGGCCCAAAGATGCCAATCGCCCCTATTAGATCACGTCATGTGTACTGATTGTCTGTGGTCGTCCTTTGTAGCAGTGGCGGTGACCTTTGCGCATGTCCGTGGGTATGGTGTACAGTCTTGTACATGTGTTCATTTTCGCAGTGTTCAGAGGCTGTTTATATGTATTGCCTCATTTGTCATATTGTAGGTGGCGGGTCATTTATCTTAGATGTGTAGTCGATTGATTGTCATGCACAGCATAGTATTTGTAGTAAAGTGTTTCATGTGCAGCACTGATGATGTGCTTCTTGTAGAGTGCTTCATGTAGAGTTGATCTGCAGCACTGATGATGTGCTTCATTGCAGTCTGGTTAATACTATATGTGTGGGCTACAGTTATACCAGTGTGTCGTCAGTGTTGTATACCCTACTCTACACATGATTCTAGTGGCATGTAATTAGCAACATCCCTGAGCCAGCATTCGTGTAGGTCAGATAATGTTCTCAGACTCGCATGTCAGTCTGTTTGGTAGTTATAACATATAGAAGTTGTGGATGTATTTTGTAGTGGTGCTTTATCATAATTAGTTTGTCGTATTGTGTTAATTCGGTGGAAGATTGAGTGTAAATAGCTTTGTAAAAGCTGTTCGAGTCATGTGTTTGTCATTACTCGTCCTCGTCTCTCGTCTTCAAATCAAAATCTACAACATATTTATGACCAATAATAAACTTGCATTCTTTTGCTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91579	CUGBP Elav-like family member 3-A OS=Xenopus laevis OX=8355 GN=tnrc4-a PE=2 SV=2
Q5SZQ8	CUGBP Elav-like family member 3 OS=Homo sapiens OX=9606 GN=CELF3 PE=1 SV=1
Q96J87	CUGBP Elav-like family member 6 OS=Homo sapiens OX=9606 GN=CELF6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003051 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012 all species →	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006376 all species →	Biological Process	mRNA splice site recognition	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13207	CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.