Gene detail

Detailed information of gene08322.t1 in Actinoscyphia liui

Genomic Location: chr11:6489591...6493856
NR annotation: XP_020892393.1, uncharacterized protein LOC110231690 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08322.t1

ATGATCCAAATACATGAGCTTCGGGAGATCAAGTCCAGCGTCACAAACGAAGAAAAATGGATCAAGGACTGCAAGATTAATATTACCATCCCAAATTCTAGCTGCTCGTATCGCATAGATGATATAACTAAATATGCGAGCCTCATTTTCCACTATCCTGATGGGCGTTGTGTTTTACCAAACAACCGCTATTTACTAGCTTGTGATTTGGCTACCATCGCTGGACAGGGGTGGCTGAGCCATAGTATTCTGGCTGGTATTGTGAGTATTCTCCAAAAAGATTCGGATCGCACCGCCGCGTTCATGCTGAATGATCTTCTGCTTATGGACGAGGAAAGACGCAAAGGCTATCTTAAAACCAAAGTAAATCAGCACACGACAGGAATCGTCTTTGTTGTAAATGTAGGGAAGATTGCTAACAACGTGTACACAAGTTCGCTGACTCAGCCTGGATGTCACTGGACATTGTTGTATGTTGAGCTGGAAAGGAACGAGTGGTACTACTGTGACACAAATTGCTGGGACGTACCGAAAGATCTTACGCAAGTTTTTTCCCCAATTATGACAACCATATATGAAGTGATTGGCATTACACCTAAACCCTTCCCTGGCATAGTGCAGGCACATGTTAAAAGCAAGATATTGCACCATATATGTTCACCGAGATGCCTACAAAATATCCCCGTTCAAACTTGTGCAAGCGTTTGTGGTGTGGCAGTTGCAGTACTTGCAGGTATTGCTTGTTTCAATCCTAGTTTATGGAGAAATGTGTTTCTTGTGAGGGGTACCGCTCTCCCTGATAGTTTGCAGTGGCTAATAAATCCTACTGCAAACTCGAATTTCCTTAGGTGCACTTTGATTTCGTGGCTGCTGAATGAAAAGATCGATGTCTCGCTCATTGGAATCCACAAAGATAATATCCCTAGCACAAACAGAGATGACCTGAACCTACAAGACGCTGGTATCAATGGTACTGACTTCGAAAAAGAAATTGAAGCTGGTATTGAAGGATATAACGTGGACGACAACACCTCAGACCACACTAATATCAAAGGAGAAGCCGAACATAACATGGATGACGACAAAGGAAAGGACGAGCACAACATGGACGACGACAAAGGAAAGGACGAGCACAACATGGACGACGACAAAGAAAAGGAAGAGCACAACATGGACGACGACAAAGAAAAGGACGAGCACAACATGGACGACGACAAAGAAAAGGACGAGCACAACATGGACGACGACAAAGAAAAGGACGAGCACAACATGGACGACGACAAAGAAAAGGACGAGCACAACATGGACGACGACAAAGAAAAGGACGAGCACAACATGGACGACGACAAAGGAAAGGACGAGCACAACATGGACGACGACAAAGGAAAGGACGAGCACAACATGGACGACGACAAAGGAAAGGACGAGCACAACATGGACGACGACACCGGAGACCACAAAGACATCGAAGGGATTGACATTGACAACGACACAGAAGACGGACATGAAAAAGACGACGAATGCACCGGAGAAGACGCTGGTATCGAAGGTGCTGGCATACAAGGATCGCAAAATCAAAAGGGTTCTGAAATTGATTTTTTTGAAGGTCAAAAATTCTCATCCTTTGATGAGCTTCAAGCTTTTAAAAAACGATATGAAGAAAGTCACTTTGTTGAATTATACAATAGAGATGTGCGAACTCTTGAAACGGCTTCAAAACGTGCTCCTAATAGAGTTGCCCTAGCTAACCCTGATCTGCGATACTATTCCGTGAAGCTCTCATGTAAATTTGGAGGGAAGGCTTTGCAAGAGATAAAGGAAACTAGGCAAAGAAACACAAAAACATTCAAACAAGGATGCCCGTTTGAAGTATATTTTCTTCTCACACCAGATGGCCAACATCTTAAAGCCATTAGAATAAAGAAGGAGCATAACCATGATATCAGGAGGGAAATTTATCAGCACCTTCCGAGACAACGAGTTTCCCACAATAAAGCCGCAGTGAAAGATATTGAAGAAGCCCTGAAACTCCAGGCAAATCCAAAACTCCTAAAAAAACAAATCGAAGACAACACTGGGCAAAAAGTAACCCTTAAAGATATTGCAAATCTGAAGTTTAATTTAAGAAAAGAGGTCAACAGAAATAACTTGGAGGAAGTCATACGCTTTTTGAAGAACGAAACAGGAGCTCTTGCAGAGGTTGTAGTTGATGACGACAGCAACTTCAAAGGTCTCTTTTACGCAGATGCTTATATGCAGAATCTGTTTAAGCACTTCACAGAACTCCTTCTTGTAGACGCAACTTACAAATTATTAGATCTAAGAATACCTGTGTATTTGATTATGTGCATAGATGGCAATGGTTTAAGTGAAGTAGTGGGTGTATTTGTTTTAGCAGAAGAGACTAAGGAAGTCATACAAGCCTCTGTGGAAATTTTTAAAAAGCACAACCCTTCATGGAGCCAAACCAAAGTAATTATGTCTGACAAGGATTTCACAGAACGAGATGTGTTTACAAAGTGCTTCCCGGGTGCAACATTGAACATTTGTTTGTTTCATACATTGCGTTCATTTAAAAGGGAGATAACGTGCGAAAAAATGGGCATAACATCTGCCCAAAGATTAAGAGCCCTAGAAATCCTTACCTCTCTGGCACATTCTAAATCCGCCGCCGACTACGCCCGTAGTCTCGACGAGTTAAAGAAGTCCAACATTAAAAGCGTCGTCGACTATGTTCTAGAGAATTGGCACCCCATCAAAGAGCAGTGGGTGACATATTTCAAGGATCACCAACTCAATCTGGGGGAAACTACTAATAACCGACTGGAGTCCACATTCAGCAAGATCAAAAGTGTGTGCTCCAAGTATGCCAGCTTGATGCAGTTTTTTTCGGAGTTCCTAGCCGTATTGAAATGCCTAAGAGATGAGCGAAACCATCAATACTTAATGGCAATAACGCGGAAGAAAACGGAGTTGCAAGCCCTCACCAAAGACCTCCAGTCCTACTCAGAGCATCTGACACCTTACGCTTTTAAATTTCTTCGCGAGCAATTCGATCTTGTCCATAAAGTAACAGTTATTTCTCAGAAAAGCAGTAACGAATTTACTCTAACTGCATCTAAACATAATATCGAACCGCACCAATCTACACCAACGCTTTGTGACTGCTCTTTTTTCACGAGAATGGATCTACCATGTAAACATATCTTTAAAGTCCGAACTCTCCTAAATCTCCCCATATTTGATCCATGTTTGTCACACAAACGATGGACTATGGAATATTATAAAGAAACGGATCGCTTCAACTCTGTCATCAGTGAGACTCCTAGTATGGAAGACGATAGGGAAATACCCAACTTTGAGGTGCACGTGACGAGAACGGAGGAAAAAACCTGGAAGACCCTTTCGCAGGCGCAAAAATTTAGGAAAGCTTTACAAAGTGCACAAGTTTTAGCCTCATTAGCCAGCGAGGGAGGAATGGCTACCTTCAAACAAAGGCAACGTGTTCTTGAAACAGTTATTAAAAGCTGGCAACTTGGCAAAGAAGTAGTTGTTTTTGATGTAGAAGAAGTTAAAGACAATGAGAGTGATGTGGCCACAGATCATGAGAATACAGAATTTAAAAGCAAATGCCCAGTTCCTACCGACAAGGAAGAAGAGATGCCGAAAGAAGATCGAGAAATCACTGGTGACAGCATCGATGCATGCGCAGTGGATAACAGCAATACCTCACAGTTCAAAAATATCAAAATGCCACCTAAGATTCTTAAAAGAGGTCAGCCAAAAGGATCCGAGGTGACAGTTATTGGTTTACCGAGAAGTAAAAAAAGAAAAGAGAAATCGCACGCACTATTACCCTTTAGTAAGCTTCCACCGGGTGAAAAAAATAGGCAAATATTAACTTTCATGACCTCTGAAAGAGCGGCAGGTGAAGCATTGGCTGGCAAACGACTACTGAACAGCGAAGATGTTCTCTCTTTACACGAAATGTCAGATGGGCTCAAAGATCATGACAATGTAGATATACAGAGAGTTAGGCAATTTTTTGACAACGATGCATGGTTGGATATACTTAAACTAAAGGAAACAAAAAATCAAATTGAATGCATTTGTGCTGTATGCCAAACAATGATTGATGATGACATGGAAGACAGCATTGCCTGTGACAGATGCCTCCTATGGTCCCACTTCCAATGCACTACCTTGAAAAAGAAACCAAAAAATCGCATTTGGTTTTGTAAATCATGTAAAACTAAGTTATTGTGA

Transcript

gene08322.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000545 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21599 all species →	ZSWIM3_N	Zinc finger SWIM domain-containing protein 3, N-terminal	Domain	Interproscan
PF20784 all species →	DUF5575_C	DUF5575 C-terminal domain	Domain	Interproscan
PF21056 all species →	ZSWIM1-3_RNaseH-like	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR048325 all species →	Domain	ZSWIM3, N-terminal domain	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR049218 all species →	Domain	DUF5575, C-terminal domain	Interproscan
IPR048324 all species →	Domain	ZSWIM1/3, RNaseH-like domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR052579 all species →	Family	Zinc finger SWIM domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31569 all species →	SWIM-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene08322.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.