Gene detail

Detailed information of gene08363.t5 in Actinoscyphia liui

Genomic Location: chr11:7278270...7337602
NR annotation: XP_020893670.2, mucin-like protein [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08363.t5

ATGATTCGTGAAAGGACCGGACATAGATCAAATGCATTGCTAACTTACGAAAAGCCTTCTGTTGAGCAAAGTGCTACAGTTTCTAAATTACTAGGACCTACTACCTCCACCAGCACTAAAATTGTTGAATCTACTGAAGCTTGTTCATCTTCTAGTAAGGACAAAGAAGTAGAAAGGGAGGGCATTGAAAGTGGAATATTTCACTCGGGATTGTTTGTGAATTGTACACTTGCAACAACTCTAGGGACGACCGTGGAACCAACTAGAGGTACACTTGCAACAACTCTAGGGACGACCGTGGAACCAACTAGAGATCCACAACAGGAAAATGTTACTATCGGTACACTTGCAACAACTGTAGGGACGACCGTGGAACCAACTAGAGATCCACGACAGGGAAATGTTACTATCGGTACACTTGCAACAACTGTAGGGACGACCGTGGAACCAACTAGAGATCCACGACAGGGAAATGTTACTATCGGTACTCTTCCACGAACTGCATGGCCAACCACGGAACCAACTAGAGATCCACGACAGGGAAATGTTACTATCGACTGTTTCAAGGACAAACCATGCTTGAATTATGGCAAGTGCAAGTCTGTAGGCGACTCATCCTACTGCTCGTGTGTTCGTGGTTTCAGTGGCGATCGCTGTCAAACAAAAAATACGAGTGCTATAGTGTGTGGAAGTTTCTCTAGCAGAACGTCCATATCGGACAACAAAATAACTCATGATCCTGGCGCTTTAAAGTTTAAAATTTGTGGCTCTGCAGATGATAAATGCTTGAATTATTCCTATGGATATCATGAGGAACGTGGTAATAAAAGTGCCGACGAGAAAGGCGTCATATTTGGGTGTATGCCTAATTCAACAACATGTTTAGATTATGAACTGTACTTAAGGAGGATTCTAGCTAAAATGAATTACACTAAGCTGTCATTGAACGTTTCATGCTGCGATGGAGACTTTTGTAACATTGGATCACAGTCTTTCAGAGGTACACTTGCAACAACTGTAGGGACGACCGTGGAACCAACTAGAGATCCACGTCAGGGAAATGTTACTATCGGTACACTTCCACGAACTGCATGGCCAACCGCGGAACCAACTAGAGATCCACGACAGGGAAATGTTACTATCGGTAAACTTCCACGAACTGCATGGCCAACCGCGGAACCAACTAGAGGTAAACTTCCACGAACTGCATGGCCAACCGCGGAACCAACTAGAGATCCACGTCAGGGAAATGTTACTATCGGTAAACTTCCACGAACTGCATGGCCAACCGTGGAACCAACTAGAGGTAAACTTCCACGAACTGCATGGCCAACCGCGGAACCAACTAGAGATCCACGACAGGGAAATATTACTATCGGTAAATATAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAAATACTTAAGAGTGAGGCTGTACTGTTTCAAGGACAAACCATGCCTGAATTATGGCAAGTGCAAGTCTGTAGGCGACTCATCCTACTGCTCGTGTGTTCGTGGTTTCAGTGGCGACCGCTGTCAAACAAAAAATACGATTGCTATAGTGTGTGGAAGTTTCTCTAGCAGAACCTCCATATCGGACAACAAAATAACTCATGATCCTGGCGCTTTAAAGTTTAAAATTTGTGGCTCTGCAGATCAGAAATGCTTGAATTTTTCCTATGGATATCATGAGGAACGTGGTAATAAAAGTGCCGACGAGAAAGGCGTCATATTTGGGTGTATGCCTAATTCAATAACATGTTTAGATTATGAACTGTACTTAAGGAGGATTCTAGCTAAAATGAATTACACTAAGCTGTCATTGAACGTTTCATGCTGCGATGGAGACTTTTGTAACATTGGATCACAGTCTTTCAGAGCCTGCCTTAATGACACACAATGCCTGAATTATGGCACGTGCAAGTCATCCTACTGCTCGTGTGTTAGTGGTTTCTATGGCGACCGCTGTCAAAACAAAAACACTAGGGGTACAGTTTGTGGAAATTTCCAAAACATCACCACAGCGACCGGCAACAAAATCTACCATTATAACACTGGCGCTTTGAAATTCCAAATTTGTAATCGAGAATGCTTTAATTATTCATATCATGTGTTATCACGTAATGATCCACGTACAGAAAGGAAAGCCGTCCAATTGGGGTGTGTGTCTGGTAAGATGCCACCATGTTCATTATTTGAAGAATACTGGAGGAACTTTTCAATAAAATATAATTATACTATTTTGGCCCTGAAATCTTCATGCTGCGATGAAGACTTTTGTAACCTTGGTTCTCAGTCATTCAAAGTGACTCCATGTCAACAGAACCCTTGTAGAAACAATGGACAGTGCATTCCGTCTGGAGATAGTTACAGCTGCAGGTGTCTAGAAATGTTCAAAGGAAAGCATTGCGAAACGGGTAATTACTGTTTCTTCAATCCTTGCAAAAATGGCGGCAAATGTGTTGAGAACCTAAGTGATCCAAACTCCTACCTGTGTAACTGCTCTAAGGGATACACAGGAGCAAGATGTGAAAAAGCTCCTTGTTTCATGAACAACATGTACCAGTTTGGACCAAGCGAAAATGATGAAGAACTTCCGTCATCCAATAAATATGCATGGCAATGTAGACAACATGACATTCCTGGGGATATCGAGTTAGACTTCTATGGACGAAGACACAAGGCGTTATATGTTTGTAGGAATGGAATCATTCAGTTTGGTTCCCAATATCCACTCACCTGGCCATTTAAATTTGGTGTTCGCCAGTGGTACAGGAACTATGGTATTATAGCGCCATTCTGGTCTTTGGTCGATCGGTACAGCTCTTTTAGCAATGATTCCTTTTATTACAGAGGCATCAAGTTCCCTCAAGACCCAAACAGTAGGTCACGTGTCTATTACCACGCGTACCACGGGATCTCTTCAGTTCTCACCAAGGCTTCACTAGACGTCAGGAAATACACCAACGATACCAAGTACAACAAGTTTAATGCCAGCCTTGTTATCGTGGCCACGTGGGTGAACATTTATCCATTGAGGTATAACCCCCCAACACCATATTATAAAATGGCAAACACGTTTCAAGTGGTTCTCATTACCAATGGATTGAGTTCTTTCACAATGTTTAATTATCCTTGTGGGGGGATTCAGTGGGTCGTTCCAGCTTCAAGTGCTTCGTCGAGAAACTACTGGTACAATAGCAATGGTCTTCCTATTTCTGGGTGGAACTCAGGAACTGGACGTCGCAACCAATACTACAACATTAGAGGGTCTGGTACACTGGATATGATAAAACTGAGCCAGTTGAAAGGGAACAGCCATGAGAATGGCCGATGGTTCTTCCATCTCAACAGTGGCCCCACTTCCAGGTCAGAAGCAGAGTTGAAGTGCAGAAGATGGCATAAGCTACAGCCAGTTATCAATCAGAACCTTTTGAAGGAACATTCTTGTCCTTGCGTAATACGCCAAGCTTGGCGCGATAGACGATTTCGTTATGATTGGCGCTTTCATTACGATTACTCTCCTCCTAACGTCCAATGTTATCTATTGAGAAATTTCTTCAGCATATGGACACCTGTTTTTCAAGTAACTGATCCATCAACTAATGAAAAACTGAATATCAGTGGCGTGTTACTCCAACGCTGTTGCTATAGCATTAAGTCTGGGAAAGAATACGGTTCCTTGGTGGAAGGTCCTCGACGTGGAGGTTATGCACGTTTGGAATTCTCCCCGAGGAAAAGTTGGCTCTTAACTGACGAAGATGCTCACCAGGCTTGCTGTGAAGAGTCGAATCTCTGTGAGCTATTTTATGAAAAGCGTCGATCTGACAATTGCCAAGACTATCGACCACCGAGAAGAAGGTGGTTCTGGGGAGATCCTCACATCGTTACCATGGACAACATGAATTATACTTTCAATGGACTTGGGGAGTACGTCATGGCTGACATCGACAATGGACTTTTCCAGCTCCAAGCGAGAACTAAGAACGTTGGTGGAGGTGAAGCAACCGCATTTGCTTCTGGGGCTGCTAAAGGAAAGAACACGGGGAAAATTGAAGTCCGTTTGAAGGATGATGGAAGCCTTGAAGTACTAGTTGATGGAAGTCTATTTAATTTTTCAACTGTAACTGCAAATATCACGAAGGAAGTGAGCAACATGTCAATTTCTCGAGAAGAGAACGATGCAGTATCTGCAACCTTTCCATCAGGCATCACCGTGACATTTGGTGCAGTTAAGGGAATGATGACAATCGTATTATCTGCACCCCAGTCGTTTAAGAACAGGACGAAGGGTTTATTGGGAGTATGGAATGACGATCCCAATGATGATCTAACACTGCCTGATGGCTCAACGATCCCAATTTCATCCAATGACAGCACTATACACTATGGATTTGGCCTCAAATGGCAAATCACCGCAGCCCAATCGCTGTTTACATACGGGAACAACCAGAGCGTTGATACTTTCAAGAATGAATCGTACGTCCCGTTATTTGCTGACCAGCTGAAGTTTTACAACGAAACTCTTGAAAAACAAGCACGAGAAGTATGTGGTTCAAACATTGCCTGTTTGTTTGATGCTGCTGCAACCAAGGATGCATCGGTTGGTGCTGCAACGCTTGCCACGTCTAACAAGCTGGTCAACGAATCAAATCAACTTGAGAACTTTCCCCCAGAAGTGGTAAACACAACGTCAAAGATCAAGTTAACGCTGAACCAAATGGCGACCATCATTGTCACAGCTCAGGATAAAAATGGTGACCCCATTAGTTTTACTTTGCCAACAATACCTGGTTTGCAAGCGACTACAAAAGATAATGTACTAACATTAAAGTGGAAAATGACCTCGACGAATAAGGTAAACTTCACCATTATACTTCAAGACCCTAAAGGTGCTTCATCAGTTTGGGAACCTTCTATATTACTATGCGCATGTCAAAATGGGGGTAACTGCTCTGAAGTAATAGACCAATCAGGTGATCGATTTCAAGTGATGCCTTGTACATGTAGTGGTGGTTACACGGGTAGGTTTTGTGAGAGTGACATCAATGCCTGTGAAATTAGAGGATCGCCGTGCTTTCCTGGTGTCCAGTGCAATGATCTTCCTGCTCCAAGTGGTTTAGATGGATATAAGTGTGGTACATGTCCTGCTGGGTATTCTGGCGATGGTGCTTCTTGTGCAGATATCGACGAATGCCTTGTAAACCCTAAGTGTTCCCAAGTTTGCATCAATACGCCAGGATCATTCCGTTGTCAGTGTAAGACTGGATATAAATTGCAATCCGATGGCATCACCTGCATAGATATCAATGAATGCCTGAAGCCAGTCTGCCAGCAGAACTGCACCAACACTGAAGGAAGCTATCGATGTGTTTGCAATGAAGGTTTTCAAGCTGATCCATCGAACACAAAACTGTGTGTCCCGAACAAAGCCTGCAATGCATCAAGTGCTGGATGTAATCAGGTGTGCTATGTTAGTAACAACAAGTCAGTTTGCTCATGTAACTATGGTTACGCCCTTCAAGACGATGAGAAAACCTGTAAAGACATCGACGAATGCAAAACATCACGTGCACCTTGCAGTCAAGAATGTAAAAACTTACAAGGCAGTTATAAATGCAAGTGTCGAGCTGGCTTTGAACTGGCTTCTGACAATACAACATGTGAAGATATAAACGAGTGCATTGGAAGCCACAACTGTAGCGACCCCTTCCACAAGTGTATCAACACTAAAGGGTCGTACAGATGTGAGTGCGAAAGTGGCCTGGAAATGAGAGAGGGCAAGTGCAAAGAAATTATACGTGTTACTACAACACCAATTCCCACAATAACTGAAGTCACACCACCAACCCCAACCCCAACCCCAACCCCAACCCCAACAACTCCAAGAGCACCAGGCGACGAAGAAAAAGCACAATCTGTTTTGATGCTCATACAGAAGATGCAAAAGAGTGAGTGGACAGAAAGTGTTGAATATAACTTCAAGAAAACCGTTGCATCTTCAGTTTCAAAGTTCTGTCAAGCAAACGGAAAGACATGTGGATTTGAAGAAAAATCACAAAGAACAAGGCGTGCAATGGCCGCTCCTGCTTATAATGCATCCCAAGTACATATCTTGCCTTTCTATCCCAAGCAAAATGGTACCAATTTGTGGGTGGCTTTCTATGTTCAAAATCCTGCCGGTAACAATGCCAACACGCCAGCTATTCCTGTCCTGGTGCTGATTGAGATTGTTAAGGGAGACCTGGACAGTATTCGAGCAGCTGTAGGAAATAAAACCATCGCCCAAGTACAAAGGCTTGTCACTCCGACCTCATCACCACCGACCAAGCCTGCTCACGTACCCTCTGAGACCTGGAAGTGGATTGTGATTGGTGTTTGTTGTGCTGTCTTTGTCCTAATCGTGATTATCATCATACTTGCGATTTACATTCGTAAGAAGAAGAGAGAGAAGATCCGTGGCTCGCGCGGCGACCACAACAAAGGCTATGATGACGACGAGCACGAAATGAGATTCGTTACCTTGAGCCATTAA

Transcript

gene08363.t5

Protein

gene08363.t5

MIRERTGHRSNALLTYEKPSVEQSATVSKLLGPTTSTSTKIVESTEACSSSSKDKEVEREGIESGIFHSGLFVNCTLATTLGTTVEPTRGTLATTLGTTVEPTRDPQQENVTIGTLATTVGTTVEPTRDPRQGNVTIGTLATTVGTTVEPTRDPRQGNVTIGTLPRTAWPTTEPTRDPRQGNVTIDCFKDKPCLNYGKCKSVGDSSYCSCVRGFSGDRCQTKNTSAIVCGSFSSRTSISDNKITHDPGALKFKICGSADDKCLNYSYGYHEERGNKSADEKGVIFGCMPNSTTCLDYELYLRRILAKMNYTKLSLNVSCCDGDFCNIGSQSFRGTLATTVGTTVEPTRDPRQGNVTIGTLPRTAWPTAEPTRDPRQGNVTIGKLPRTAWPTAEPTRGKLPRTAWPTAEPTRDPRQGNVTIGKLPRTAWPTVEPTRGKLPRTAWPTAEPTRDPRQGNITIGKYRGEERRGEERRGEERRGEERKYLRVRLYCFKDKPCLNYGKCKSVGDSSYCSCVRGFSGDRCQTKNTIAIVCGSFSSRTSISDNKITHDPGALKFKICGSADQKCLNFSYGYHEERGNKSADEKGVIFGCMPNSITCLDYELYLRRILAKMNYTKLSLNVSCCDGDFCNIGSQSFRACLNDTQCLNYGTCKSSYCSCVSGFYGDRCQNKNTRGTVCGNFQNITTATGNKIYHYNTGALKFQICNRECFNYSYHVLSRNDPRTERKAVQLGCVSGKMPPCSLFEEYWRNFSIKYNYTILALKSSCCDEDFCNLGSQSFKVTPCQQNPCRNNGQCIPSGDSYSCRCLEMFKGKHCETGNYCFFNPCKNGGKCVENLSDPNSYLCNCSKGYTGARCEKAPCFMNNMYQFGPSENDEELPSSNKYAWQCRQHDIPGDIELDFYGRRHKALYVCRNGIIQFGSQYPLTWPFKFGVRQWYRNYGIIAPFWSLVDRYSSFSNDSFYYRGIKFPQDPNSRSRVYYHAYHGISSVLTKASLDVRKYTNDTKYNKFNASLVIVATWVNIYPLRYNPPTPYYKMANTFQVVLITNGLSSFTMFNYPCGGIQWVVPASSASSRNYWYNSNGLPISGWNSGTGRRNQYYNIRGSGTLDMIKLSQLKGNSHENGRWFFHLNSGPTSRSEAELKCRRWHKLQPVINQNLLKEHSCPCVIRQAWRDRRFRYDWRFHYDYSPPNVQCYLLRNFFSIWTPVFQVTDPSTNEKLNISGVLLQRCCYSIKSGKEYGSLVEGPRRGGYARLEFSPRKSWLLTDEDAHQACCEESNLCELFYEKRRSDNCQDYRPPRRRWFWGDPHIVTMDNMNYTFNGLGEYVMADIDNGLFQLQARTKNVGGGEATAFASGAAKGKNTGKIEVRLKDDGSLEVLVDGSLFNFSTVTANITKEVSNMSISREENDAVSATFPSGITVTFGAVKGMMTIVLSAPQSFKNRTKGLLGVWNDDPNDDLTLPDGSTIPISSNDSTIHYGFGLKWQITAAQSLFTYGNNQSVDTFKNESYVPLFADQLKFYNETLEKQAREVCGSNIACLFDAAATKDASVGAATLATSNKLVNESNQLENFPPEVVNTTSKIKLTLNQMATIIVTAQDKNGDPISFTLPTIPGLQATTKDNVLTLKWKMTSTNKVNFTIILQDPKGASSVWEPSILLCACQNGGNCSEVIDQSGDRFQVMPCTCSGGYTGRFCESDINACEIRGSPCFPGVQCNDLPAPSGLDGYKCGTCPAGYSGDGASCADIDECLVNPKCSQVCINTPGSFRCQCKTGYKLQSDGITCIDINECLKPVCQQNCTNTEGSYRCVCNEGFQADPSNTKLCVPNKACNASSAGCNQVCYVSNNKSVCSCNYGYALQDDEKTCKDIDECKTSRAPCSQECKNLQGSYKCKCRAGFELASDNTTCEDINECIGSHNCSDPFHKCINTKGSYRCECESGLEMREGKCKEIIRVTTTPIPTITEVTPPTPTPTPTPTPTTPRAPGDEEKAQSVLMLIQKMQKSEWTESVEYNFKKTVASSVSKFCQANGKTCGFEEKSQRTRRAMAAPAYNASQVHILPFYPKQNGTNLWVAFYVQNPAGNNANTPAIPVLVLIEIVKGDLDSIRAAVGNKTIAQVQRLVTPTSSPPTKPAHVPSETWKWIVIGVCCAVFVLIVIIIILAIYIRKKKREKIRGSRGDHNKGYDDDEHEMRFVTLSH

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWY9	Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q99102	Mucin-4 OS=Homo sapiens OX=9606 GN=MUC4 PE=1 SV=5
Q8JZM8	Mucin-4 OS=Mus musculus OX=10090 GN=Muc4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06119 all species →	NIDO	Nidogen-like	Family	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR003886 all species →	Domain	NIDO domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR005533 all species →	Domain	AMOP domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991 all species →	Cellular Component	protein-containing complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene08363.t5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.