Gene detail

Detailed information of gene08464.t1 in Actinoscyphia liui

Genomic Location: chr11:9545194...9560756
NR annotation: XP_031554769.1, excitatory amino acid transporter 3-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene08464.t1

ATGGATCTTTTCCTTCTGAAAGCAATTTTTGTGATTGGGTTTTTGAGAATCGGTGAATCTCATGCAGAAGAAGCTTCTGGGAAGAGATATACGAAACCTCGAGGATACCTCAAACAAAGGCTCTGCTACTACAGCAACCATGTGGCATGCTTTTCAATCAACAAACCACTCGTAAATGTCCACCCTAATCCTGGACCTGTTGGTGATAGCAAACACACTGTCAACTGCCTGTATTTAAACGCCAGGAGTGTTGTCAATAAAATGGACGAACTTAAAACTCTTGCTGTTGACATGGATCTGATCGCCGTTGTCGAGACATGGCTAAAACCCAGCATAATGGATTGTGAACTTCTATCAAGCTCCGACTTCACATTACATCGACGGGACAGAGCCTCAAGACCTGGTGGTGGTGTAATGCTAGCTGTACGTAATACCCTTCACAGCATCCGGCGGAACGATCTTGAATGCAATGCTGAGGCATTAGTTTGTGAACTTCGTCCTGACTCAAGACGCAAACTGCTAGTTATAGTCTTTTACAGACCACCAGACTCCGATCTGGACTACATAAAAGAGTTCAAAAAAATATTGCGTCTTGCGTGCAAGTCTAAACACGACCAGATCCTAGTCTGTGGTGACTTTAATCTCCCACATATTGACTGGAGGACAGGTTTGACTATTACTGGAGATACCATCCATAATTACTTCACCAAAACAGTACAGGATAATTTTTTGTGGCAGCTAGTTGATTTCCCAACCAGGGGAGACAATATTCTGGACTTAATTCTTACCAACATCCCCGATAAAGTTTCTGATGTACCTGGTTCAGATGATATTCTCTCCACCGACCACAGACTTATATCTTTTGTTCTAGACTTTAATATTTGCAAAAAACCTATGGACCGCACCTTACTGGGGAATCGCGAACAGTGGAGCCGAAGCTATTCTCAGAGTAAGAGAAAAAACCGAGACTGCACATTATCAAGCGTAAATGAAAATAAAATGACTTTTCGCGAGAGAATCAATCAAGTCCAGCGTTCCTCAGGACGATGTAGACGAGTGAGACCAAAAAACTTGCTACTGCCATTGATAATCTCTGGAGCAGTACTAGGGTTTCTAGTCGGGGCGCTGATCAGTAGCACCATCAACGCCATAGAAAGTCCAGAGGAAAGAAAAACGACTCTAATGCTGGTTGGGTTCCCAGGCGAATTATTGATGAACATGCTGAAGATGATTGTGCTGCCCTTAATCATAGCGAGTCTAATTACTGCGCTCTCCTCACTTGATTCCAAATCGGCAGGGAAGATTGGACGACGGGTGCTGGCATACTATCTCACCACAACGTTGTGTGCTAGTATTATTGGTATTCTCATGGTCGTCACTATTCGACCTGGAGAAGTACAGGGAGTAGAGAAATCTTCTACGAGTACTTCAACAAAATATCGCACACTCGATTCACTTTTGGATCTTTTAAGGAATATTTTCCCAAACAACATCGTGGCTGCTTGTTTTATGGCATACAAAACACAATATTCTTCTGAACCTGGCAAGTACGACTCATATAACATCACTTCCAACACCACCCTCCCAAGTACCAAGACCACCATTCAGGTCTTTAATAACGGTACCCATAATATCACCATGGTAACACGTGAGGTGTACGCCCCTAGCAACAACGTCCCTGCTGGTACCAAGATTGTTCTAGGTCATGTTAACGTTATGGGAATTACTGCGTTCTGCGTGGCGTTTGGTCTAGTGCTGGGTCAACTAAAAGAGAGAGGTCTACCATTGAAGGTTTTATTCAGTGCACTGAATGACGTGGTGATGAAGATTGTCACTCTAATCATGTGGTTTTCGCCAATTGGTATCTTCAGCCTGGTGTGCGCTAAGATTTCGCAGATGAACAACACTCTAGCAACGTTACAAATGGTTGGTTTATTTATGCTATCTGTCCTATGTGCTGTATTTATTCATGGGTTGGTCGTGTTGCCCCTTGTCTACTTCATCATCACAAGACAGAACCCGTTTAAGTTCATGGCTGGGATGGGAGACGCCTTGGCCACTGCGTTTGGAATCGCATCAAGCGCTGCAACCCTACCAACAACGATACGATGTGCTGAAGAAAACAAGTATAACAAAATTGACAGCAGAATCGCTAGTTTTGTTCTACCACTCGGAGCAACTGTTAACATGGATGGCGCTGCTTTGTTCGAGGGTGTCATTGGCATATTTGTTGCTCAAATTCACGGTATTGAAACAACTCCTGCTTTCCTTTTTACAAACATATTGATGGCTGTTTCTATTTCAGTCGGAGCAGGCGGAATTCCTTCAGCAGGATTCATCTACCCAATCCTCTTACTCCAGACGCTTGGGCTCCCTGTGGAGGATTTGGCTCTAATATTACCAGTCGAATGGTTTTTAGATCGATTTCGTACAGCACTGAACGTCTGGGGTGATTCCGTTGGTGCTGGAATCGTCAATCACATGTCACGTGATGACCTGCTGGAACTTGATGCTCAGATGGCCGAGAATGGCGAAGTGGAACTCCTCACCCAGTCCCCTCTCGCTTCCAACAGTTTTGACGATCAGGAAGATAAGAAACTATCGGGATCTATTCAAGTATACAGCGAGACTACCTTTTAG

Transcript

gene08464.t1

Protein

Uniprot

Uniprot term	Description
P43006	Excitatory amino acid transporter 2 OS=Mus musculus OX=10090 GN=Slc1a2 PE=1 SV=1
P31596	Excitatory amino acid transporter 2 OS=Rattus norvegicus OX=10116 GN=Slc1a2 PE=1 SV=2
P51907	Excitatory amino acid transporter 3 OS=Rattus norvegicus OX=10116 GN=Slc1a1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00375	SDF	Sodium:dicarboxylate symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036458	Homologous_superfamily	Sodium:dicarboxylate symporter superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR050746	Family	Dicarboxylate/Amino Acid:Cation Symporter	Interproscan
IPR001991	Family	Sodium:dicarboxylate symporter	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR018107	Conserved_site	Sodium:dicarboxylate symporter, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11958	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005313	Molecular Function	L-glutamate transmembrane transporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015175	Molecular Function	neutral L-amino acid transmembrane transporter activity	Interproscan
GO:0015501	Molecular Function	glutamate:sodium symporter activity	Interproscan
GO:0015813	Biological Process	L-glutamate transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05617	SLC1A6, EAAT4; solute carrier family 1 (high affinity glutamate/aspartate transporter), member 6	-	Transporters	ko02000	deepkoala