Gene detail

Detailed information of gene08510.t3 in Actinoscyphia liui

Genomic Location: chr11:10662993...10668893
NR annotation: XP_028410816.1, uncharacterized protein LOC114533486 [Dendronephthya gigantea]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08510.t3

ATGGAGGAGAAATTGAACGTGAAACTCAAGCTGTTGGATTTGACACGAGGGAAAATAAAGGGAATCATTGAAACAAGGAATATCGACAAAATCAAGAGACAAAAGGATCTAATCGAGGGAGTTTTAAAAGCTGTTGAGCTGCTAAAGATCGAAGTTGAAGAATCCAAGCTGGAAAGCGGAGAAACAGTGGAAACAATACAAGAATGGGGACAACAAATCGATGAGAAAATCGCCTTTGCCGACGGTGACATGACAACGCTGTCTGGATGTATGAAAGAAATCGACACATATGAGGAGAACGAGAGAATTGCAAAGCAAGAAATGATCAGCGCTAGACAAAGAGAGGAGCAATTGAAGTTCGAAAAGGAGCAATTGGAGATGAGAGCGAAATTCGGAGACGCTAAAGAAGCCGTTAGCAAAACATCCATCGAAAATTCTCGTGTGAAGTTGCCGAAGTTGTCAATTACCCCCTACGATGGGAAGCTGGAAAATTGGCTTGGTTTTTGGAACAAATTCGAAGCTGAAGTCGACTCAATCAGTATGCCTACAGTTACCAAGTTCGCCTATCTAAAAGAAATGGTTGAACCTAAAGTCCTCTGCGCTATTGATGGGCTTCCTTTCTCAACGGAAGGTAATGAGAGAGCGAAGAACATTCTAAAGTCTACGTATGTACGTGGTGTGCTTGACAAGTTGCCTGGAATTAAAGCTGACCTAGTGAGAGGAAAATCAGATTGGCAGTCCTGGGGATTTTCTCAACTGTCAACTGCGTTAAAAGAATGGACGGAAATCCACCCGGAAATTCTTGTAACAACATCCAAAACTGCAGAGAAACCACCCCGTCAGCAGAGAAGTTTCTTCCAAGCAGAGGAGCATACACCTTCATGCGTGTATTGTGATCAGTCAACACATAAGTCTGTGGACTGTACAAAGCTGAAGACGAGTGAAGAAAGAAAAAAATCCTTAAGTGAGCAGAGAAGGTGCTTTAATTGTACTGGCACTAAACATCAAGCAGCAAAATGTAGAAGTCGTGGAAATTGTGCAAAGTGCCAAGGCCGTCATCATACATCTATTTGTGATAAAAGTCAACAAAGACCACCGCATGGTGTAGCAATGACAGCGGTAAGTGAAAGAGTTTGTCACCCTGTCGTAATTGTCAAAGTTAATGGAGTGAAGTGTCGTGCACTCTTGGATACGGGATCAACGAGTACGTATATGTCAGCATTCCTAGTGGATCTGCTAAAAATCAAACCCAAACAGACACTCACTCGCAGTATCAAGACCATTGTAGGTCTAGTTACCAAGCGTGTTGAGACTTATAGTGTTGAGATTAGCGACAATGATGGAAAATGTGTACTGCCGGTTTCTGCAACAAAGTTTGAGCGAAAGGAACTGTTGTCGCTAGGTAATCCAAATTACCCAGAGCTTTTACGAAAATACCCATACCTGAAAGGTATAAATATGAAAGAAACATCTGGTGAACCTCAGCTTCCGATACATGTCATCCTTGGAGCCAATGAGTATACAAAGATTAAGATGGCTGGCTACCAACGTGCTGGAAAAATGGGAGAACCTGTGGCAGAACAAACAAGGTTTGGATGGACGATTATGACAACAGGTGCCGAAGCTGACCTGGAAAGCATGTTCCTTACTCAGACCGCTATTGGGGACTACGAGGAACTGTGTCGCTTGGATGTGCTTGGTTTGGAGGACACGCCCACTGGAGACCAGAACATGGTGCATGCAGAGTTTGTTGAACAACTTCAGCGCAGCCCAGAAGGCTGGTATGAGACTGGAATTCCCTGGAAGGGGGGTCATCCTCCCTTGCCAGACAACAAGACAGGGAGTCTGAAGCGACTGGAGAGTCTAGTGGCAAAGCTAAGACGCACTGGAAACCTGAAAGCCTACGATGAAATCATACGTGAGCAACTCGAGAGTGGAATTGTAGAGCCAGCTGATGAGCCCGCAAAAGGAAAAGAATTCTACATACCGCATAAGCCTGTAATCAGAGAAAATGTTGAATCAACAAAGCTGCGGATAGTATATGATGCCTCTGCGAAAGCAAGTGCAACTGCGCCATCATTGAACGACTGTCTGGACATCGGACCACCGCTCCAAAACTTGCTGTGGAAGGTTCTAGTACGTGCAAGATTCCATGCAGTTGCCATAATTGGAGACATGGAGAAAGCATTTCTGCAGGTGCGTATCCGCGAGGAGGATAGAGATGCTTTGCGTTTCCATTGGATCGACACAGAAAACCCAGGTAAAGTGAAAACCTTCCGTTTCACTCGAGCACTGTTTGGTTTGGGACCATCCCCTTTCCTCCTTGGTGGAGTCATCCAGCAGCATCTGAACACCTGTCGTGTTGATGCACCTAAATGTGTTGAAGAAATCGAGCATGGACTTTATGTCGATGATCTTTTGCTCGGAGGAGATACAGTAGAAGAAGCACGCGAGATGAAAGCAGCAGCAACAGAGATCTTTGCGAAAGCCCATTTTGAACTACACAAATGGAACTCTAATGCTAGTGAACTAGAATGTGACGACCAAGCAACTGAACCTGCACAACAAGTGAGTGAGTCTGTGCAACCACAACAAGTGAGTAAATCTGTGCAACCACAACAAGTGAGTAAATCTGTGCAACCCCAACAAGACGAAGTAATTGAGTCTGCGCAAGACCAACAAGTAAGTGAAAACTCCATTACGTATGCTAAACAACAGCTTGGTGTGAAATCTGGAGAGTCCAGGATACTCGGGTTGGAGTGGGCTAAAGATAGTGATACCCTAGCAGTAAAGTTTCCTAAAGAACAGACTCCGCCGACTAAAAGGGGTATACTCAGTAAAGTTGCTAAAGTGTATGACCCTCTTGGGTTGGTGTCACCCCTCACCCTGAAAGGGAAACTTTTGTACCGTGATGCTTGTGACGTAAAGTGTGCGTGGAATGCAAAACTTCCAGACGAACTTGTGACACGATGGAGAAAATGGGAGAAGGGCCTTCCCTTACATGTAGAGGTCCCAAGAGCACTGGTTAACGTAGGAGAACCCATCAAGAACATTGCACTTCATGCATTTGGAGATGCAAGTGGCTGCGGGGTAGCCGCAGCAGTCTACGCAATAGTACAACAAGAATCTAGTATCAACCAAGGGCTTGTTGTGGCACGTGCGCGTCTAGCTAAACAGGGACTCACTATACCTCGTTTAGAACTTGTTGCAGGTCACATGGCAGTAAACTTGTTGACCAATGTTCAGAATGCACTCGACGGATTACCTGTGGGGTCCTTGCACGCTTGGCTTGATAGTACTGTGGCACTATACTGGATTTCCGGCAGCGGAGAGTACAAGCAATTCGTGGGAAATCGTGTGCGCAAGATCCAGGATCACGATGAGGTCAGCTGGAGACATGTACCGACGCACGACAACCCTGCTGATCTGGGGAGCCGCGGTGGACCTGTGAGTAAAGACAACCAACTATGGTGGAAGGGACCCGACTGGCTCAGCGACCCATCAGCATGGCCACCAAACATTGTAACATCACCAACTATTGAATCTGAAGCAGAGAAGAAGGCAGCCACGCAGGTCTTCGCCTTGGCTAAAGAAGAGTCTGATGAACTTGACCAACTGCTCCATAAAACAACTCTATGGCGCACTCTGAGGGTTGGCGCGTGGATTTCTAGATTCATACACAACGCGAGACATCAACGAGAAGCAATATGGATACCTCGTCTGAGAAGACTGGTTAAGCGAATTGTTAAGAAGTGTGCTGGATGTAAGCGGTTTCAGGCAGTGGCCTTCCTCAACCCTCCTGTTGGCCCACTGCCGAAGGACAGAACTGAAGGGAATACCCCCTTTGAAGTAATCGGAGTCGACTATGCAGGTCCTCTAGAATACAAAGTATCCAAGAAGAAAACAGGTAAAGCGTATGTCCTGCTGTATACGTGCAGTTTAACGCGTGCCATCCATCTGGAGTTGCTGCCGACGCTGGAGACACAAGACTTTATCAAGAGTTTTAAAGCATTTGTCGCACGAAGAGGCCGCCCAAAGAAAGTCTATTCAGACAATGGCCGTACATTTGTGGGTGCAGCTAGGTGGCAACGAACGGTGATGAACGACGAGAAATTCAATGACTTGCTCGCGCAGAACAGCATTGTTTGGCAGTTTAATTTGAGTCGAGCTCCATGGTGGGGAGGACAGTTTGAACGTCTGGTGGGATTGGTGAAACGAGCTCTTCAAAAGTCCATTGGCCGGGGACTCCTCACATGGAAAGAACTGGAGGAAGTTCTTCTAGATGTTGAAGTTGCACTGAATGGAAGACCGTTAAGTTACGTCGAGGATGACCACCAGCTACCAACTTTGACACCAAATGCACTACTCTATACGCAGACCAACGTGATCCCAGAGTTAGACCTTCACCACGTGGAGGACACCGACTTGAGAAAAAGAGCAAAGTACCTACAACACTGCAAGCAGGTGCTGTGGAACCGCTGGACGTCCGACTATGTGCGCGCTCTGCGAGAACGACACAACTTAAAGCACAGTGACAAAACAGCCATTCTTGATAAAGGTGATGTGGTGATAATTCGAGGAGACCACAAGGACAGGAACAAGTGGAAGCTAGGAATTGTGGAGGACCTGATCGTTGGACGTGACGGTGTATTACGTGCAGCCAAGCTACGAAGTGGCAGAGGGGTACTAGAGCGTGCAGTACAACACCTCTACCCTTTGGAACTTACATGCGACCGAAACAACGATGCCCATCAAGTACAGCTCAACCCCAACGTTCAAGTGTTCAGACCACGACGAGATGCAGCAGTGGCTGCCAAACTACGCATACAAGATGATGAAAACTTTGAACATTGA

Transcript

gene08510.t3

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF13650 all species →	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955 all species →	RETROTRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene08510.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.