Gene detail

Detailed information of gene08557.t1 in Actinoscyphia liui

Genomic Location: chr11:11309186...11320631
NR annotation: XP_031557570.1, low-density lipoprotein receptor 1-like [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08557.t1

ATGATCGCTGGAAGAGTCAGCCTTTCGTCGTTTGTGGCGCTATGGATGGCTTTTGGACCAGTCCACGCCATGACTTTACCAATCCTGTGTGGGCCTGGTGAGTTCACGTGTTCTAATGGTGGATGTATACCGCTGGACTGGGTGTGTGACGGTACGGTTGACTGTCCCGCGGGATATGACGAACTTGCTAACTGCACTTCGTGTGCTGCGTACGAGTTTGAGTGTGGTGATCAGAGACAGTGTATTCTTGAGGACTGGCGGTGCGATGGTCAAGTGGATTGTAAGGATTATTCAGATGAGAATAATTGCACTCTTCGACTACAACCTGTTCAACAGCCCTGTGGCCATAACGAGTACAAGTGCGATGATGGTAAATGTATATCTATTAACAATCTATGCGATGGTAAAATAGACTGTCACGACAAGACTGACGAGAATGGCACGTGCGAAAACTTTGAATGCTCCACAAACAACGGGGGATGTTCGCACTTTTGTCAAAACTCTCCCAAGGGACCCCTCTGTGGGTGTCCCTCAGGTTTCATCTTGGGACCTAATGGGACGATCTGCCGTGACATTGATGAATGTACAGATGGTGTGGACTCGTGTAGCCAAATTTGCGCGAATTCTATTGGTAACTATACGTGTGAATGTAGTACAGGTTACAACGTGACAGTGGATGGACAAGGTTGCGTTACTCAAGAATACAACTTGCTATTCATTGTTGGTCAGCGGCTATACATCATGGCTTCAGACAGCACCCAGCCCTCCCCACTGTTACCCGTCCCCAGTACAGGAGGAGGAATGGACTATGATTACAACACCATGACAGTTTACTGGGCTGATAACCTATTGCAAATCATCTACAAGGCACACCTACAGGGATTGTGGAGTGATGTGAAGATTATTGTACATGGTACAGGCACGGTCGAAGGAGTTGCAGTAGACTGGGTTGGCAAGAACCTATACTGGACAGACGATGAGAAAGACACCATAGAAGTTGCAAAGCTGTCAGGGGAATACCGATCAACGGTTATTAACACAGGACTAGATAAACCCAAAGATATAAACTTAGATCCAGCGAGAGGATACATGTATTGGATTGACTGGGGACGAGTTGCCAAGATAGAGAGGTCCCACATGGACGGGCAGAAGAGAGAGGTACTTGTATCGTCTAAGATAACATGGCCAAGTGGATTATCACTAGATCTACCAAATAACCGATTATACTGGACGGACGGGAAGAGAGGCAAGATTGAGAGCGTCACGTTGACTGGTTCAAGTCGTCGCACAATCTTTGTTGGTAAGTGGTCTCACCCATTTTCAGTAGCAGTATTCGGAGATCACGTGTTTTGGACCGACAGTTTGACGTCGCAACTCGAGAAAGCCGACAAGCGTACGGGAAAAGACCGAGCAATGCTCCTACATACTGGCGAACGAATAACTAACGTTCGGATTTTCCATCCTCTTCTCAGACCGCCAGTTTCCAGTCCCTGTGAGGCGTCCAATTGTCCACATCTCTGCCTGCTTTCTCCAAGCGGCTACTCATGCGCATGTGCAGATAGGAGTAACTCCACTGACCGACACTACTGTTTACAAGTTGACCAGTCTACTACAGTTCCTTCAACCACTTCAACCCAAGTCTCCAAACACTTGAAGTCTCCAAAGACGTATCAAAGTCACGTGACTCACAAGAAGAAAAAGAAAATCCACTGGAACGGAACGAAATCAAAGGCGAAAAAAGACAAAAGAGGCAAAAATGGGACAAAAGGAATACTTCCTAACTACAAGAGAACCAATGAGATTAAAGACCTTGGCGAACAAAACGACACGAACGAGTTCTTATGTCTACACAAGATTTGTAAAAGTGTGGGAGACTGTGATGCATACCTGAGCATGCGCAGTAACAAGGATTCTAATACTCCGATGCCCATCCAGACGAACTGCACATGCGTAGAACGCATGCGTGGGAAATGTGGTCAGATTATATCCGAGAAAAGTATAACACGACTGTCTGAATTCAGTGCACATTGGATATTCATCCTGATCGTCTTCTCGCTGGCCGCCATCGCTATCGCGCTAACAACGATAATCTGGAAACGGATCCGCAATAACTTCCTACGAACCACTCGCGCAACTTACAACAAGGAATCTCAACGTATCGCGATAACAAGCATACCCATTGAAGACGTCGACTTCGAGGACGAAGACAACGGACCGATCTACAACCCGACCCCGGGGTACATAAATCCTTTGTACGCGATCTCAGATTCGGGGCAGTCGACTCCGGTATTTGAAACGGCTATAGTATTCGAGGAGCTTCAGGACACGGAGGAAGTTGGTCGCGAGTACCCTCATGTTGGGAATTTTGGTCAGTATTCTCCAATCAGCGAGGATCTGGTGGAGGAAAATGACAACCAATGCAACGAGTTCCACCAGTTTGTGAACCCAGTCTATGTCAGCCCTAAAGATTGA

Transcript

gene08557.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P98158	Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus OX=10116 GN=Lrp2 PE=1 SV=1
A2ARV4	Low-density lipoprotein receptor-related protein 2 OS=Mus musculus OX=10090 GN=Lrp2 PE=1 SV=1
P98164	Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens OX=9606 GN=LRP2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000278 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR051221 all species →	Family	Low-density lipoprotein receptor-related	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722 all species →	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006898 all species →	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0042562 all species →	Molecular Function	hormone binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene08557.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.