Gene detail

Detailed information of gene08595.t1 in Actinoscyphia liui

Genomic Location: chr11:12043725...12051304
NR annotation: XP_020899587.1, calumenin [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5X4E0	Calumenin-B OS=Salmo salar OX=8030 GN=calub PE=2 SV=1
Q7SXV9	Calumenin-B OS=Danio rerio OX=7955 GN=calub PE=2 SV=1
Q5RDD8	Calumenin OS=Pongo abelii OX=9601 GN=CALU PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000528 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10827 all species →	RETICULOCALBIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23901	CALU; calumenin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.