Gene detail

Detailed information of gene08600.t1 in Actinoscyphia liui

Genomic Location: chr11:12101037...12117885
NR annotation: XP_031568102.1, AP-2 complex subunit alpha-2-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08600.t1

ATGCCGGCCGTAAAAGGCGAAGGGATGCGAGGACTGGCTGTCTTCATCTCTGATATACGTAACTGCAAATCTAAAGAAGCAGAAATCAAGCGAATCAATAAAGAACTCGCGAACATCAGGAGCAAATTCAAAGGCGATAAGACTTTGGATGGATACCAGAAGAAGAAGTATGTTTGTAAACTTCTTTTTATCTTTCTCCTGGGCCATGATATCGACTTTGGTCACATGGAAGCCGTGAATCTGCTCTCTTCGAACAAGTATACCGAAAAACAGATTGGGTATTTGTTTATTTCCGTGCTGGTCAGTGCCAACAGCGAGCTCATTAAACTCATCGTCCAGAACATCAAAAATGACCTCTCCAGTCGCAACTCCATTTTCGTGTGCCTCGCGCTTCAGTGTATTGCAAACATTGGCAATCAAGAAATGGTCGACCAGCTTGGATCAGAGATTCCTAAGTTACTTGTGTCTCCTGACACTACTGACAGTGTCAAGCAATGTTCGGCGCTGTGTGTATTGAAGCTGTTTAGGCTTAAACAGAGTATACTGCCGCCAGGGGAGTGGACGTCGAGGATTGTGCAGTTGCTGAATGATAAGCATTTGGGTGTGGTTACCTCAGCCTCCAGTCTTATCCATGGTCTGGTTTATTACTATCCTGACGAGTACAAAGGTTGCATCCAGCTTGCTGTATCCAGACTGAGCAGGATTGTGACGTCGTCATACACAGATCTACAAGACTATACTTACTACTTTGTACCTGCGCCATGGCTGTGCATCAAGCTGCTCAAACTATTGCAGAGTTACCCATCTCCAGAGGATCCAGCTGTGTCATCTAGACTTCATGAATGCCTTGAGACAATCTTGAATAAAGCCCAGGAGCCTCCAAAGTCCAAGAAAGTCCAGCATTCTAATGCAAGGAACGCAGTGTTGTTTGAATGCATTAATCTCATCATTCACATGGATAATGAGCAGAGTTTGTTGATCAGGTCCTGCAATCAGCTTGGTCAGTTCTTGACTCACAGGGAAACTAATCTCAGGTATCTTGCTCTGGAGGGATTGTGTCTCATGTCGAACAGTGAATTCTCTGCCGATGCAGTCAAGAAGCACCAAGAAACTGTAATGAGTGCACTCAAGACTGAGAGAGATGTGAGTGTGCGTCAAAGGGCAGTAGACTTGCTGTATGCCATGTGTGACAAGAACAACGCTGAGGAAATCGTCTCAGAGATGCTGATCTATCTGGAAACTGCAGACTACTCGATCAAAGAAGAGATGGTCCTAAAAGTTGCAATCTTGGCTGAAAAATATGCCACTAATTACACCTGGTACGTGGATACCATCTTGAATCTTATCAGGATTGCCGGGGATTACGTGAGCGAGGAGGTGTGGTACCGTGTCATTCAGATTGTCATCAACCGAGATGACATACAAGGCTATGCTGCAAAGACTGTGTTTGAAGCCTTGCAGTCACCGTCTTGTCACGAGAACATGGTGAAAGTTGGAGGATACGTTTTAGGAGAATTTGGTAACTTGATTGCTGGTGATCCACGTTCTAGTCCCATGGTGCAGTTCCAGCTTCTCCACAGCAAATTCCCACTGTGCACTCATGCCACAAGAGGTTTACTGTTATCTACATATATCAAGTTTATCAACCTTTTCCCTGAAATTAAGCCACATTTGCAAGAGGTTTTGAAGAGTGATTCCAATCTCCGTAATGCAGATGCTGAAATCCAACAGAGGGCACTGGAGTACTTCAGGCTCAGCACAGTTGCATCACCCGATGTCCTGGCCACTGTGTTAGAAGAAATGCCACCATTCCCAGAACGAGAGTCATCAATTCTTGCAAAATTAAAAAAGAAAAAACCAAACGCAGTGAAAGAGAAAGATGAGAAACCAGAAGTGGAGAAACCAACGTCAAATGGACAACTACCGCTAGCAGATGCACCTCAAGTTAGCATAAATGTTGCTCCTGCTCAACTGCCAGATCTTATAGGAATGAGTTCTGCCTTTCCAGCCGTACCAAATGCAGCTCCTGCCAGCTCTGCTGGACTTTTGGTGGATGTATTTGAAATCCCCTCAGTTATGGGAGCATCTGGAAAGTACCTGATTTGCATGTTTGGCGGGCATTTACTAGTTAGATTTGTATGTAAGAATACCGGTATTCTGTTTGAGAATGACTTCATTCAAGTAGGAGTAAAGTCAGAATTCAAAGATGTTGTAGGTCATATTGGATTGTTTTATGGAAATAAGACGTCGTCACAGTTTTTTAACTTTAGTACATCAGTCAATCTCCAGCCAGAACTCATTTCACATATCCTTTTTGTAGTGTAG

Transcript

gene08600.t1

GTTCCCTCTATGTCACGCTGTCGCTGCCCCGCCCATATTACCGCTGGCTTTACGCGGGCTCCCGAGTACTAGCCTCGATTCCAAGCGGTTGATGGCGGCTGCCATCTTAACGAGTTTCTTGTCTCGAAATATCTAATTTACACCTAAACAGCCTTATTTTCCACCGTTTAAGTACTAAAAGCCCCCACAGAGGTGCTGTAGGCTTTCATAGCAACGACTGGCTGATTTCTGAGGCTGAATTGAGGCGTTTAGAGTCGTTCTGCTGAGGGAAACTCCGTACCAACTGGAACTCAGTACAGAGATTTGAGGGGTGGTCTTGTCGGAACTTACTCTCGTGGATCAAAATGCCGGCCGTAAAAGGCGAAGGGATGCGAGGACTGGCTGTCTTCATCTCTGATATACGTAACTGCAAATCTAAAGAAGCAGAAATCAAGCGAATCAATAAAGAACTCGCGAACATCAGGAGCAAATTCAAAGGCGATAAGACTTTGGATGGATACCAGAAGAAGAAGTATGTTTGTAAACTTCTTTTTATCTTTCTCCTGGGCCATGATATCGACTTTGGTCACATGGAAGCCGTGAATCTGCTCTCTTCGAACAAGTATACCGAAAAACAGATTGGGTATTTGTTTATTTCCGTGCTGGTCAGTGCCAACAGCGAGCTCATTAAACTCATCGTCCAGAACATCAAAAATGACCTCTCCAGTCGCAACTCCATTTTCGTGTGCCTCGCGCTTCAGTGTATTGCAAACATTGGCAATCAAGAAATGGTCGACCAGCTTGGATCAGAGATTCCTAAGTTACTTGTGTCTCCTGACACTACTGACAGTGTCAAGCAATGTTCGGCGCTGTGTGTATTGAAGCTGTTTAGGCTTAAACAGAGTATACTGCCGCCAGGGGAGTGGACGTCGAGGATTGTGCAGTTGCTGAATGATAAGCATTTGGGTGTGGTTACCTCAGCCTCCAGTCTTATCCATGGTCTGGTTTATTACTATCCTGACGAGTACAAAGGTTGCATCCAGCTTGCTGTATCCAGACTGAGCAGGATTGTGACGTCGTCATACACAGATCTACAAGACTATACTTACTACTTTGTACCTGCGCCATGGCTGTGCATCAAGCTGCTCAAACTATTGCAGAGTTACCCATCTCCAGAGGATCCAGCTGTGTCATCTAGACTTCATGAATGCCTTGAGACAATCTTGAATAAAGCCCAGGAGCCTCCAAAGTCCAAGAAAGTCCAGCATTCTAATGCAAGGAACGCAGTGTTGTTTGAATGCATTAATCTCATCATTCACATGGATAATGAGCAGAGTTTGTTGATCAGGTCCTGCAATCAGCTTGGTCAGTTCTTGACTCACAGGGAAACTAATCTCAGGTATCTTGCTCTGGAGGGATTGTGTCTCATGTCGAACAGTGAATTCTCTGCCGATGCAGTCAAGAAGCACCAAGAAACTGTAATGAGTGCACTCAAGACTGAGAGAGATGTGAGTGTGCGTCAAAGGGCAGTAGACTTGCTGTATGCCATGTGTGACAAGAACAACGCTGAGGAAATCGTCTCAGAGATGCTGATCTATCTGGAAACTGCAGACTACTCGATCAAAGAAGAGATGGTCCTAAAAGTTGCAATCTTGGCTGAAAAATATGCCACTAATTACACCTGGTACGTGGATACCATCTTGAATCTTATCAGGATTGCCGGGGATTACGTGAGCGAGGAGGTGTGGTACCGTGTCATTCAGATTGTCATCAACCGAGATGACATACAAGGCTATGCTGCAAAGACTGTGTTTGAAGCCTTGCAGTCACCGTCTTGTCACGAGAACATGGTGAAAGTTGGAGGATACGTTTTAGGAGAATTTGGTAACTTGATTGCTGGTGATCCACGTTCTAGTCCCATGGTGCAGTTCCAGCTTCTCCACAGCAAATTCCCACTGTGCACTCATGCCACAAGAGGTTTACTGTTATCTACATATATCAAGTTTATCAACCTTTTCCCTGAAATTAAGCCACATTTGCAAGAGGTTTTGAAGAGTGATTCCAATCTCCGTAATGCAGATGCTGAAATCCAACAGAGGGCACTGGAGTACTTCAGGCTCAGCACAGTTGCATCACCCGATGTCCTGGCCACTGTGTTAGAAGAAATGCCACCATTCCCAGAACGAGAGTCATCAATTCTTGCAAAATTAAAAAAGAAAAAACCAAACGCAGTGAAAGAGAAAGATGAGAAACCAGAAGTGGAGAAACCAACGTCAAATGGACAACTACCGCTAGCAGATGCACCTCAAGTTAGCATAAATGTTGCTCCTGCTCAACTGCCAGATCTTATAGGAATGAGTTCTGCCTTTCCAGCCGTACCAAATGCAGCTCCTGCCAGCTCTGCTGGACTTTTGGTGGATGTATTTGAAATCCCCTCAGTTATGGGAGCATCTGGAAAGTACCTGATTTGCATGTTTGGCGGGCATTTACTAGTTAGATTTGTATGTAAGAATACCGGTATTCTGTTTGAGAATGACTTCATTCAAGTAGGAGTAAAGTCAGAATTCAAAGATGTTGTAGGTCATATTGGATTGTTTTATGGAAATAAGACGTCGTCACAGTTTTTTAACTTTAGTACATCAGTCAATCTCCAGCCAGAACTCATTTCACATATCCTTTTTGTAGTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VCK5	AP-2 complex subunit alpha-2 OS=Bos taurus OX=9913 GN=AP2A2 PE=1 SV=1
P18484	AP-2 complex subunit alpha-2 OS=Rattus norvegicus OX=10116 GN=Ap2a2 PE=1 SV=3
P17427	AP-2 complex subunit alpha-2 OS=Mus musculus OX=10090 GN=Ap2a2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003821 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF02883 all species →	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR017107 all species →	Family	Adaptor protein complex AP-1, gamma subunit	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR008152 all species →	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR050840 all species →	Family	Adaptor Complexes Large Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780 all species →	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030121 all species →	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0030122 all species →	Cellular Component	AP-2 adaptor complex	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0140312 all species →	Molecular Function	cargo adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11824	AP2A; AP-2 complex subunit alpha	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.