Detailed information of gene08746.t1 in Actinoscyphia liui

Genomic Location: chr11:14629862...14638928
NR annotation: XP_044171182.1, uncharacterized protein LOC122955507 [Acropora millepora]
Species abbreviation ALIUI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9DBA9General transcription factor IIH subunit 1 OS=Mus musculus OX=10090 GN=Gtf2h1 PE=1 SV=2
P32780General transcription factor IIH subunit 1 OS=Homo sapiens OX=9606 GN=GTF2H1 PE=1 SV=1
Q960E8General transcription factor IIH subunit 1 OS=Drosophila melanogaster OX=7227 GN=Tfb1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000092 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08567
all species →		PH_TFIIHTFIIH p62 subunit, N-terminal domainDomainInterproscan
PF04500
all species →		FLYWCHFLYWCH zinc finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013876
all species →		DomainTFIIH p62 subunit, N-terminalInterproscan
IPR007588
all species →		DomainZinc finger, FLYWCH-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR027079
all species →		FamilyTFIIH subunit Tfb1/GTF2H1Interproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR019786
all species →		Conserved_siteZinc finger, PHD-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12856
all species →		TRANSCRIPTION INITIATION FACTOR IIH-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000439
all species →		Cellular Componenttranscription factor TFIIH core complexInterproscan
GO:0005675
all species →		Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006289
all species →		Biological Processnucleotide-excision repairInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan
GO:0006360
all species →		Biological Processtranscription by RNA polymerase IInterproscan
GO:0006366
all species →		Biological Processtranscription by RNA polymerase IIInterproscan
GO:0070816
all species →		Biological Processobsolete phosphorylation of RNA polymerase II C-terminal domainInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene08746.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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