Gene detail

Detailed information of gene08761.t1 in Actinoscyphia liui

Genomic Location: chr11:14990212...14999402
NR annotation: XP_028514648.1, sodium/hydrogen exchanger 10-like [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08761.t1

ATGTATTCACACTCTGACATTAGATCGTTGGTGATCGCGTTCTTTGCGCCTGTCCTGATGCACATTGGGTATGGTTTTACGTGGCAGACAGCTGTAGTGGTTTCATGGGGAGGTCTACGAGGTGCTGTTGGTCTTGCATTGGCTTTACAGGTCTATATTGACCATGAGGAAGTAGGGAATAAGATTCTGGTCCACACTGCTGGTATATGTTTGATTACACTAATAGTCAACGCTACCACCATGGAGAAACTGCTAGAATTGATGGGTATGAGTGAAATCTCGGACTCTAAAAAGATCGCCATGACTAATGGTGTACGACGAATCAGAGAAACCAACGCCAGTACTCTTACCATGCTTAAAGCTGACCGCTTTTTAGCGGATGCGGACTGGAAATTGGCGCGAAAGTTTTGTGAAATCAGAAACCCTTACATGGAGATGGACAGTGAGGGAGAGTGCGACGATGCGGAAACGTCTCTGCTCGTACGTCACAGTACATGTCCAAACTGCGAATCCAGCGTGCCTAACGAGCCTTCGTCCAAAGAGTTTGCAGAAATGGCTGAAGATGGACGCATTCGTATGATAAAAGCACAAAAAGTCAGCTACTGGAAGCAGTTTGAACACGGCATGTTATCCCGTGAGGCAGTGCAGTCGTTGAGTAACTTAGCGGACACAGTGTCTGACCTGCCAAACAGAATCATTCTCGCAGACGACTTGAGCCCATTCTGGAAAGTACCAACATATCTACAAAAACTGAGAGATAAACTGGAAACCTTGAAGCAGTCAAAGGACTATGAGCTTGACCAGTCTCCTAACAATCGAATCCAATACTTTATGTATCGTGTTGCCATGCATGTTAGTTTTGATGCCATAATGAATGCCCTTATTTTCTTCAACCTGATTCCAATCATCTTTGAGCTGACGGCTGATGACGATGCGCCTTACATGGGAATACTCAAGATTGTCAATTATGTCTACTGTAGTATCTACGTTTTGGAAGCAGCTTGGAAGATTTGTGCATTTCGAGTCCACTACTTCAAAGATTACTGGAATCTATTGGACTTTTTCATCGTTATATTGTCGCTTATTGATATAGTGATAGACAGAGTAACTGATAACGCTACTGGAAGCTTTTCGCCGGCTGTACTCAAGGTAGCGCGCGTGTTTCGTATACTCAGGATGGGCAGGCTGATTAGGCTTGTCAGGCCGCTGCTTCCCAAACTCATCGACAGTGTGGACGATTTCATAAACAGCAGACTAAGCTTTGGTTACGATGTTGGCAAAGGCTACATTGTTGCCGAGGAAGAAGTAAACAAATTGATTGAACACATGGTAGTCGATAAACGAATTACACGAGATTTAAAAGTGCGCTCTGATCAGAACAGACTTGATGTGGTGAAGAGTCTAGGTTTGCTGCAGCGTGAGCATCCTGGCATTGCAATATCCGTCAAGACGCGACAAGCAATCAGAACTGTGTTGAACAACGCCCGCGATGTTACTAATGAGCTACGTGGAGGTGGATTACTAGACGAGGCAGAGTACAAGAAACTAGAGTCGCTTATCGAGACAAAAATGAAGAAACAGCTAAACGCACCTTCGTACATTCCACCCCAAACCGCCGACTCTCTGCTGCGAGGCGTGGTATGGCTAGAGGGAATGGATGCTGAAGTAATTGACTCCATCATAGACATGGCAGAATTGAGACAATTTGACTATAGCGATACTATATCCAGGCAGGGAGATGATGTGGATGGAATTTATCTCATAGTTAGTGGAATGGTCAAGATGATAGGCGTCTCTGTAGCGAAGTGGAAAGACATGTTAGGAGATGCCGAAGTAGGTGACATGATCGTGACAACAGATTACATGACAGCGGGTAATCTGATTGGTGAATTTACTTTACTCACGAGTTCGTCACGCACTTCATCATGTACCTGCGAGACTTCTGTCCAGACGTATTTTCTTCCCAAAAAGAAGATGCTCAACACACTGGATGACCACCCAGAGCTTGCTAACAGACTATGGCGAGTGTGTGGCGTGCGCATCGCTGTTCCTCTACTCATGGACATGCTGGTGTACCACAACTGGACCAAGGACAAGATAAGACTAATGTGTGAACGTTCTTACCTCATGAAGATCCCCCAACCAAGTCCCAACGCTGTTTTCAAAATGACGGCGATGATGCAGGAGGCTCTACTAATCCAGGGCCAAGTTACCTGTACCGAAACACGAGAGGTTTACGAAGGGCCGGTGATTCTACCGAAGGCGTACCGAAACTACAAACTGCACTACGAAAAGGAGCCGAGGATCCTCGTGATCGTTCGTGTAAATGAGAATCCCGTCTCGGAAGACGTCGGTGATACACCTTCGGCTCTGGATCTCCTCGCCATCACCAGAAGTAGAACACGAGCTCGTGCTTCATCAGTGGACAGCGGTCATGATCTCCACGATGGATACGGCAGGAAGAAACGCCAGGGTACAGTCACTAGCTTATTTGACAGCGGTCGACGTCTGGAGCCCTTAAAAGAGACGCAAGGAAGACAGATTACAGTGTTGACGGCCACAGAGTCTGATGACGTTATACATGATAAATCTGGTCTTGATATTTGA

Transcript

gene08761.t1

TGACATTAATATAAGGCGCCCTCTGATTGGTCACGACTGACATTAATGTAAGGCGCGCTCTGATTGGTCAAGACTGACATTAATGTATTCACACTCTGACATTAGATCGTTGGTGATCGCGTTCTTTGCGCCTGTCCTGATGCACATTGGGTATGGTTTTACGTGGCAGACAGCTGTAGTGGTTTCATGGGGAGGTCTACGAGGTGCTGTTGGTCTTGCATTGGCTTTACAGGTCTATATTGACCATGAGGAAGTAGGGAATAAGATTCTGGTCCACACTGCTGGTATATGTTTGATTACACTAATAGTCAACGCTACCACCATGGAGAAACTGCTAGAATTGATGGGTATGAGTGAAATCTCGGACTCTAAAAAGATCGCCATGACTAATGGTGTACGACGAATCAGAGAAACCAACGCCAGTACTCTTACCATGCTTAAAGCTGACCGCTTTTTAGCGGATGCGGACTGGAAATTGGCGCGAAAGTTTTGTGAAATCAGAAACCCTTACATGGAGATGGACAGTGAGGGAGAGTGCGACGATGCGGAAACGTCTCTGCTCGTACGTCACAGTACATGTCCAAACTGCGAATCCAGCGTGCCTAACGAGCCTTCGTCCAAAGAGTTTGCAGAAATGGCTGAAGATGGACGCATTCGTATGATAAAAGCACAAAAAGTCAGCTACTGGAAGCAGTTTGAACACGGCATGTTATCCCGTGAGGCAGTGCAGTCGTTGAGTAACTTAGCGGACACAGTGTCTGACCTGCCAAACAGAATCATTCTCGCAGACGACTTGAGCCCATTCTGGAAAGTACCAACATATCTACAAAAACTGAGAGATAAACTGGAAACCTTGAAGCAGTCAAAGGACTATGAGCTTGACCAGTCTCCTAACAATCGAATCCAATACTTTATGTATCGTGTTGCCATGCATGTTAGTTTTGATGCCATAATGAATGCCCTTATTTTCTTCAACCTGATTCCAATCATCTTTGAGCTGACGGCTGATGACGATGCGCCTTACATGGGAATACTCAAGATTGTCAATTATGTCTACTGTAGTATCTACGTTTTGGAAGCAGCTTGGAAGATTTGTGCATTTCGAGTCCACTACTTCAAAGATTACTGGAATCTATTGGACTTTTTCATCGTTATATTGTCGCTTATTGATATAGTGATAGACAGAGTAACTGATAACGCTACTGGAAGCTTTTCGCCGGCTGTACTCAAGGTAGCGCGCGTGTTTCGTATACTCAGGATGGGCAGGCTGATTAGGCTTGTCAGGCCGCTGCTTCCCAAACTCATCGACAGTGTGGACGATTTCATAAACAGCAGACTAAGCTTTGGTTACGATGTTGGCAAAGGCTACATTGTTGCCGAGGAAGAAGTAAACAAATTGATTGAACACATGGTAGTCGATAAACGAATTACACGAGATTTAAAAGTGCGCTCTGATCAGAACAGACTTGATGTGGTGAAGAGTCTAGGTTTGCTGCAGCGTGAGCATCCTGGCATTGCAATATCCGTCAAGACGCGACAAGCAATCAGAACTGTGTTGAACAACGCCCGCGATGTTACTAATGAGCTACGTGGAGGTGGATTACTAGACGAGGCAGAGTACAAGAAACTAGAGTCGCTTATCGAGACAAAAATGAAGAAACAGCTAAACGCACCTTCGTACATTCCACCCCAAACCGCCGACTCTCTGCTGCGAGGCGTGGTATGGCTAGAGGGAATGGATGCTGAAGTAATTGACTCCATCATAGACATGGCAGAATTGAGACAATTTGACTATAGCGATACTATATCCAGGCAGGGAGATGATGTGGATGGAATTTATCTCATAGTTAGTGGAATGGTCAAGATGATAGGCGTCTCTGTAGCGAAGTGGAAAGACATGTTAGGAGATGCCGAAGTAGGTGACATGATCGTGACAACAGATTACATGACAGCGGGTAATCTGATTGGTGAATTTACTTTACTCACGAGTTCGTCACGCACTTCATCATGTACCTGCGAGACTTCTGTCCAGACGTATTTTCTTCCCAAAAAGAAGATGCTCAACACACTGGATGACCACCCAGAGCTTGCTAACAGACTATGGCGAGTGTGTGGCGTGCGCATCGCTGTTCCTCTACTCATGGACATGCTGGTGTACCACAACTGGACCAAGGACAAGATAAGACTAATGTGTGAACGTTCTTACCTCATGAAGATCCCCCAACCAAGTCCCAACGCTGTTTTCAAAATGACGGCGATGATGCAGGAGGCTCTACTAATCCAGGGCCAAGTTACCTGTACCGAAACACGAGAGGTTTACGAAGGGCCGGTGATTCTACCGAAGGCGTACCGAAACTACAAACTGCACTACGAAAAGGAGCCGAGGATCCTCGTGATCGTTCGTGTAAATGAGAATCCCGTCTCGGAAGACGTCGGTGATACACCTTCGGCTCTGGATCTCCTCGCCATCACCAGAAGTAGAACACGAGCTCGTGCTTCATCAGTGGACAGCGGTCATGATCTCCACGATGGATACGGCAGGAAGAAACGCCAGGGTACAGTCACTAGCTTATTTGACAGCGGTCGACGTCTGGAGCCCTTAAAAGAGACGCAAGGAAGACAGATTACAGTGTTGACGGCCACAGAGTCTGATGACGTTATACATGATAAATCTGGTCTTGATATTTGAACGGCCATAGTCACACAAGAGACTGCCACGCCTTCCAAGGGTGCAATCTTAGCGCAAAAGTAAACGTTTTGAAGGGAAACTCTTTCAAATCAATTTATCCACTAAGAATTACTTATATATCCGTTCTAACGGCCATGACGGAGTTTTTTATTTGCGTTTCTCTACGAATCTCATCTCTTGTGTGGAATGTTTAGTTTCTTTGTATTATTTGTAATTGGAAACTTTTTAACAAAATTGTTGTCAAACATTTTATGGACAATTTTTTTATCCTAATTTTTCTATACAAGATATTTTAACACTTGTGTATTATATGTGACTGTGTATATAGCTATTTATTGTCATTGTAATAAACTAATCAATTTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3RL54	Sperm-specific sodium:proton exchanger OS=Strongylocentrotus purpuratus OX=7668 GN=SLC9C1 PE=1 SV=1
Q4G0N8	Solute carrier family 9 member C1 OS=Homo sapiens OX=9606 GN=SLC9C1 PE=1 SV=2
Q6UJY2	Solute carrier family 9 member C1 OS=Mus musculus OX=10090 GN=Slc9c1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004272 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR043203 all species →	Family	Voltage-gated cation channel calcium and sodium	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10037 all species →	VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001518 all species →	Cellular Component	voltage-gated sodium channel complex	Interproscan
GO:0005248 all species →	Molecular Function	voltage-gated sodium channel activity	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene08761.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.