Gene detail

Detailed information of gene08763.t2 in Actinoscyphia liui

Genomic Location: chr11:15009805...15027538
NR annotation: XP_020899501.1, ankyrin repeat and SAM domain-containing protein 1A isoform X2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08763.t2

ATGGGCAAAGAACACGATCTTCTCAATGCTGGCAAGACTGGAAATGTATCTCAAATCGAAAAAATACTCGGCCAGCGAGGAAAGAAATCTGGTCTACACAGTATTATTGTAAGAAGTACAAATCCTAATTATCAAGATGAGATGGGCTACACACCATTGCATTACTCCTCTTTGAATGGACATAGGGCTGCGGTTGAACTTCTTCTAAAGTATGATGCTTCAGCCAATATCCCTGACCATTCAGGTAATTATCCTCTTCATCTGGCTGCTTTTAATGGCCATGCAGAAGTGTGCCGTGTACTCATGAATTCAGGACCATCAAGAGCCAAAGTCAATGAGCAGAATGGAACGGAAGAGGCAGGTACGGCGATGCATTCTGCAGCCCAATCAAAGTCATCTCAAGTTGTAGCTGTCTTACTTGAGAATCATGCAGATCCTTTCATAAGAAACTGTCGCAAGCAGTCACCACTGGATTTAGCAGCACAGTATGGACGCATAGAAAATGTCAAGCTATTGTTGAGTTATCATCCCCATCTGCTACAAGACAATGTGAAAACACATTCTCCTCTTCACTTAGCGGCACGAAATGGACACATCGACATAGTTTCCAACCTCCTTGGATGTGGAATGTCTGTCAACACTGAGTGTGATACAGGCACGGCTCTACATGAAGCAGCCTTGTATGGAAAACTAGATGTGTGCAATTTCTTACTGCAGTGTGATGTTGATATCACTATTAAAGATAAAAATCACATGACTGTCATGGACTTACTTATGAACCACCCGTCATCGAAAACCAAAGAAATCAGTGCACTGATCTATAATTATACACAGAAAAAGTGTCGGCCTAAGTTAACACAAGGTCCCATTACTGGCAGTTTTAAAGAACCACAGATGTACTCGACCGTTGCCACACCAACCAAACGTGCGAGCACCATCTCATATCGGTCCTCTAATTATGATGAAGTACCAGATTTCAGATTATTCCAAGGTCCTCAAAGGCGAGATACTTATGATACTGTACCTGCTCCAGTATCAAGTCCAACCCAGTATGATAGTAGTGTCCCGACTCCGCCAACTGTATCAGATACAGCTAAAGAAGATGAATCCGCTTACTCCGAGGCAAGACATGGTTCATCACCAAATGTAATTCCCCTACGGAACACCACTGGATATTCATTTCTAACAGCTCCTGGTGAACCAACCACAGGAAACCCAATACTAACACCTCGAAATGTCCAGGATGGATACACAATGCTTGGGGTCCCTGTGGCAATGGGAAATGGTCAGTCATATTCTACTGTACGATCTGAGGCCTCTCAGAAGACCGTCTATGGGTCACCTAAATCGCAGAAGAAGATCGTCTCTGCAGGGTCACCTAAATCACAGAGATTCCCTACAGGGGGTGGACAGGGGGATCCTTTGCCAAGTAAAGACATGGTGAGTAAAGAGAACTCAGCGTATTATAAAATAGTACCACACTCAAACCCCGAACCACAGACACCAACCGCCACCTCTAACAGTATCCCAGAGTATGACGTTGTTCAGTCCCCACCTAAACAGCGTGCTCTTGATATACCTGTATACGAAGTACCTCCTGCTCCAATACTCCAACAGCGACAACCATACGAACAGTTAACTCAGCCTGAAGGAGATTATGGTTTAATCGGCGCCGTATTTGCTCCAAAACCATCTAAACCTGTGCGGCCACCCAGACGTCACGACTCAGAGAACCTACCAGCTGCCACAAGTCCACCTGTTTATGAGGTACCGCCATCATTTAAGCAGAGGGAGGAGACACGTGAGCGTTCAATAAGCAAGACCTGTCCACTGGATATCCCAGAGGATCTTCAAATGGAAAGGTCTAGTGCCAGTCCTTTGTGTCCAGATGCAGCTGCTCTGGCAACACAGGCAGGGTATGAATTCATGGGGCCTGGGACGCCACCTAATGACACAGATAACCTGTATGAATACGAAGTCCTTGCACCTAATCAAGGTGGATTTGAACTGAAAGGTGCTAAGGTATCAGGTGGTCAATATGAATTGATATCCATGGCTACGACAAAACCAGGATGGGCATCGCAGGCATCACTAGCGCAGTCCACCTCAGTGTATGAAATAGCACCTACCCCAATATTGGCCCCACAAGAACCACGCCCCATGGCCCCGACTACATCACCTCAAGGACCCTCACTGTATGAGATTCCACCACCTTTTGCATCACCTCCATCCCAAAGTCCGCCAATATATGAAATTGCTCCTCCCATTAGCCCATCTCCATCCCAAGGTCCGCCAATATATGAAATTGCTCCTCCCATTAGCCCATCTGCATCACAAAGTCCACCAATATATGAAATTGCTCCTCCCATTGCCCCATCTACATCACAGAGTCCTCCTATTTATGAAATTGCTCCACCTCCACGACCACTCCGAGTCCCTGAAAGGCCCCCACCATATAATGTCCCTATGATTGGAAACATGGAAGATAAACAGCCAGCTCCTCCTGTTGCTCTCCGGTCAAGTAATCCGTACCAAAAGTGTCCCATTCAGCCTACAGTGGACCCAACCTTGGTTACAAACAAACCGACGCTCCCATCAGCATATGAACAAGTGCGTCTTGAAGCACCTAAAGGCAAGATCAACATGGACCAGCTCCCTCCAACAGTGCCCCCACGGACTTACATTGGAGACTATTGCACACTTGATCTAAATGCTGTTGGCTCCATAAACCCTCCGCCCATCACCAAACGGGAAGACGTCAGCTCTGGCTCAAGTTTTGGGTCGGCATCAAGCAGTGATGTGACTGAAATCCCTGGAATTCCTCCGCCCTCACCAAGCATAGCTGAAGCAGCTGTATTTGCAGCATTGGACACAAGTGAAGAAAAACTGGCACCAAAAAGTGAGAACAATAATCAAGTAAATAGTACTGGGTCGCCTGTTCCTTTACCAGTGAGGCGAGAGAGTTTAAATGACAGACCTAAATGGTACTCAGAGGAAGTCGAGGCCAATGACGACGATGTTGCGCAGGATCCTTTTAGTAACCCGCCTGCTAAGAAAGAAGAAACCAATCTTGCTAACAATGATATCGATTCCACCACCACAAACACTGCGTTTGCTTCTCTTCATAACCGATTCTCACCCGGATCGATAGAAAACTTAACTGAGGAATCGACCGAGGAAATCATAAGCGAAGAAACTAAAAGTGAAGAAAAAGAAGAAACACCACGAACGCCTCTCATTTACGAAAATGTGTTATTCAAGAGAAGCGATAGTACTGTTCGCAATAACATTACAAACAAACCCGAAGACAAGAATCCAGAAGTGGAAACCACAGCGGAAGACATTGATGACAGCACAGAGGTTGTGACCAAGTCTATATTCAGCACAGACCTCTTAAGCTCACTTGATGAAGAGGCAGAGTGGGAAAAGATTGATCAGCTTTTAATGTCTATAGGAGATATCGGGAATATCGAACAAACCGCAGATGCAGGGAAAGCAACAACTGTTCCTGAATGGTTGAAAGCCATTGGTGTTGGTGAATACGAGTCAGAGTTGATGACAAATGGTTTTGATGACTTAGACTTTATTAACGGCGGAGTACTTGAAGACCAGGATTTACTAGAGATTGGTGTTACGGATGTCTCGCACAGAAAGATCATCCTAGAAGCAGCCAAGTCCCTCTCCTCTCCTCCACGTATAGCAAAGATGGAGGATCCCCCCACGTCTGTCGAGGAATGGTTAAAGCTGATCGAACTTGGTGACTATTTACAAGCGTTCTTGCATCATGGTTATGCGACCATGGATCGAGTGAAGATGCTGTGGGAGGTTGAGCTTACATCGGTGAGTGTCAACACTAGCACAACCTTAGAATTGTCATCATCATCATCATCGTCATCATCATCGTCGTCATCATCATCATCGTCGTCGTCATCATCATCATCATCATCGTCATCATCATCATTATTATCATCATCATCATCGTCGTCATCATCATCATCGTCATCATTATCATCATTGTCGTCATCATCATTATTATCATCATCATCGTCGTCATCATCATCATCATCGTCATCATCATCATCATCATCATCGTCGTCGTCGTCATCATCATCATTGTCGTCATCATCATTATCGTCATCATTATCATCATCATTATCATCATTGTCATTATCGTCATCATTATCATCATCGTCATCATCATCATTAATACCACACCTCTGA

Transcript

gene08763.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z6G8	Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens OX=9606 GN=ANKS1B PE=1 SV=2
Q8BIZ1	Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus OX=10090 GN=Anks1b PE=1 SV=3
P0C6S7	Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus OX=10116 GN=Anks1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003331 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR041880 all species →	Domain	Ankyrin repeat and SAM domain-containing protein 1, SAM repeat 1	Interproscan
IPR033635 all species →	Family	Ankyrin repeat and SAM domain-containing protein 1/Caskin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24174 all species →	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene08763.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.