Gene detail

Detailed information of gene08764.t1 in Actinoscyphia liui

Genomic Location: chr11:15033281...15041486
NR annotation: XP_020899502.1, lysosomal aspartic protease [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene08764.t1

ATGAAAGGCTTTAGTTTGCTTGCAATGGTTCTGTTTCTTGGCCTTACACAGGGCCTAGTCAGAATTCCCCTTCACAAGATGTCAACAATTCGTCAAGAGCTCAAGAAAGTAGGGATTTCATCTCAGGACATCTATGAAAAAATGAAGAAACAAGGAGAGTGGAAAGTGAATGGTGACGTCCCAGAACCACTGACTGATTACATGGATGCTCAGTACTATGGTGAAATACAAATAGGTACACCTGGACAGCCCTTTAAAGTTGTCTTCGACACTGGCTCGTCGAATCTTTGGGTTCCATCGAAACACTGCAGCTGGACAAACATTGCTTGCTTGTTGCACAACAAATACAATGGTGCTGCATCAAGTACTTACAAAAAGAATGGAACAGAGTTTGCCATTCACTATGGCAGTGGAAGTCTGTCTGGCATGGTTCGACAGAAGCTTGTCGACAATGCAGTATTTTCCTTCTATCTTAATAGAGATGCATCAGCAAGCATAGGTGGTGAGCTGATTCTTGGTGGTAGCGACCCTAAACACTACAAGGGTAACTTTACGTACCTCACTGTCACCAAGGAAGGGTACTGGCAGTTTAAAATGGATGGTGTTAGTGTAAAGGGAGAGAAATTCTGTGAAGGTGGTTGTCAAGCAATTGCCGATACTGGAACGTCGCTTATTGCTGGTCCAACTGCAGAGGTCACCAAGCTGAACAAACTGATTGGAGCCACACCCCTTATTGGTGGAGAGTACATGGTGGATTGTGCTAATATTTCTAGTATGCCAAACATCGACTTCCAGCTTGGTGGGAAAACATTTACTTTGACCAGTGAAGAGTATGTGTTGAAGATGACTGTCATGGGCAAGACTGAGTGTCTGAGTGGCTTCCTGGGGATGGACATTCCTAAGCCTATGGGACCGCTATGGATTCTGGGTGATGTTTTCATTGGTCCATATTACACCGAGTTTGACCTGGCTCACAACCGTGTTGGCTTCGCTGAGACAGTGTAATCACGTGACAATAATTTAGATTTAAAAAGTAACCGATCTTTGGAACTCATTATGAATTACCAATCAGCTGTGATTGTTTGTTAAGGCTCAGTAACGCAAGCATAAGGACAAGCATTACATTGTATTAGCAGTGCTTGTCTTTTCTCACACCTATGAGATAAATGTAGCACCGAGTCTTAGAACAAGCAACATACAGACTCAGTAATGTACTGCTTATTAGCAGTGCTTGTCTTTTCTTGCAGCTATGAGATAAATACAGCACTGAGTCTTAGAACAAGCAACATACAGACTCAGTAATGTACTGATTATTAGCAGTGATTGTCTTTTCTCGCAGCTATGAGATAAACTCAGCACTGAGTCTGTGTATATCACATCAGTGACACACTTACCATAAACATTCATGTATTCAAGATTCAGTTTTTATCAGCCGTTTTACAAATTTGTTTTATGTCATTTTTTAAGTTTTTTTGTCACCAAAGATTTGCAATAAAAGTTATACAGTGGAACCCCGATTTAACGTACCCCGATTTAACGAAGTCCCCGATTTAACGTACAAATGTTTTCGGCCCGGCCAGAGTCACAGTAAAATGTATGGAGAAGAACCCCGATTTAACGAACCCCGATTTAACGTAATCCCCGATATAACGAACAAAATCTGGAGGACCGAACGTAAAAACTACCCCGATATAACGAATAAAATGTCATCACGCCACAGAAGACGAATCCGGCAAGAGATGAAACCGATAATATTTTGTTTATTCTCTAAGAACATTGTCAGCAGCTATCCATTACATGCCGCTAAACAGAGTGTTATCGTTGCCATCTAATCCGCTTTATCTTCTTTGTCTTTAATGAGTTCTATTAATTTCTTTATTTTCGATGGCTTCTTGTGGTAAAGTTGGACAGTGAAGCAGAACGGTCAATTTTAATTATTACTTATACCCCGATCTAACGAAGTTTTTGGTCATTTTTCCACAAATTCGTTATATCGGGGTTCTCGATTTAACGAAACCCCGATCTAACGAACTGTTTTTTCCGGTCCCCTGCGCTTCGTTAAATCGGGGTTCCACTGTAATCACTAAAGTTCCTGTGTGTGGCCTTCGTGCTTCTCACGGTTCTTTAATCCTATCGAACACTACTAACAAGCTTTTATCAATAAATCTTCTAATTTCCTCTTCTTTCTTGTGCAAGCGAGGGTTTACAGAGGAAAAAAAAACATTAAAAGTGATAGTTCATTGTTTTTATGTAGAATAAATATATGCTAAAAACTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03168	Lysosomal aspartic protease OS=Aedes aegypti OX=7159 GN=AAEL006169 PE=1 SV=2
Q9DEX3	Cathepsin D OS=Clupea harengus OX=7950 GN=ctsd PE=1 SV=1
Q05744	Cathepsin D OS=Gallus gallus OX=9031 GN=CTSD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004267 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14543 all species →	TAXi_N	Xylanase inhibitor N-terminal	Domain	Interproscan
PF00026 all species →	Asp	Eukaryotic aspartyl protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR001461 all species →	Family	Aspartic peptidase A1 family	Interproscan
IPR033121 all species →	Domain	Peptidase family A1 domain	Interproscan
IPR032861 all species →	Domain	Xylanase inhibitor, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47966 all species →	BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01379	CTSD; cathepsin D	EC:3.4.23.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.