Gene detail

Detailed information of gene08768.t1 in Actinoscyphia liui

Genomic Location: chr11:15099575...15121500
NR annotation: XP_020899590.1, DNA polymerase delta catalytic subunit [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08768.t1

Transcript

gene08768.t1

ATGGATAGCAACCAGAAGAGAAAAGGGGAGTTTGGTGAGAGCAGTTCTTCAAAACGCTCCAAAAATGCTGATGATTTCAAAGGAGTTCAACCAAGCAAGTTTGAAAGCGAACTTGCATCGCTGCAGACTTCCGATTCATCGGCAGGAAGCTCTCGTCGAGATCCAAAAGCCAAGTGGAAAAGGCCACCATTGCCTTATATAGATCCTGGTAGAGATTCTATTGAATTCCAACAGCTTGATGTGGAGAATTATATTGGCACCCATCTACCTGGGATGCCCGGTTCTAAAGTTGGTCCAGTTCCTATAATCCGTATGTTTGGTGTGACTATGGAAGGCAACAGTGTCTTATGCCATATACATGGGTTTGTACCGTACTTCTACGTCCCAGCTCCACCGGGGTTTAATGAAAACCAGTGTGGTGTATTCCAGGACACTCTCAATCGAGCTGTCTTAGCTGACATGAGATCCAACAAGGATAATATTTCACAGGCGATTCTTGCTGTTGACTGTGGAAAGAAAGAAAGTATCTATGGTTTCCATGGCAACACTAAACTCCTATTCCTTCGCATCACTGTCGCACTACCCAAACTCATCGCACCCTGTAAGAGGCTTTTGGAATCTGGATTTAAGTTTGGAACATATCCCGAGCGAGGTTACTCTACGTATGAAAGCAATGTTGATTTTGAGGTTCGTTACATGGTTGACTCCAATATCGTTGGTTGTAACTGGATAGAGATTCCTGCCGGCAAGTACAAAGTACGTACCCCACTATTGCCAACCCACAAAAGTGAATCCAGATGTCAGCTTGAGATCGACGTGGCGTGGGATGAACTAATAAGCCATGTTCCCGAAGGTGACTGGTCTAAAATAGCTCCAGTGCGTATCCTCAGTTTTGACATAGAGTGTGCTGGGCGCAAGGGAATCTTTCCTGAAGCAGAAAAGGATCCTGTTATCCAGATTGCAAACATGGTCGTACGGCAAGGAGAGAAGGTTCCGTTCATTAGGAACATCTACACTCTTGGTGGTTGCTCATCAATCGTTGGGTCACATGTCATGTCGTTTCAGAATGAAGGAGAGTTATTGAAGTCCTGGAGTCAGTTCATCCAAGAAGTCGACCCAGACATCATCACTGGTTACAATATTGTCAACTTTGATATCCCATACTTGTTAACCAGAGCTGCTACTTTGAAAGTCCATCCTTTCCCTCTTCTTGGTCGAATTGTCGACGAAAGGAGCGTGGTCACTAGTACTACATTCCAGTCCAAGGCGTACGGCAAACGTGAGAATAAAGTCATTAACATTGCGGGTAGAATACAGTTCGATTTGTTGCATATTTTGCAGCGAGAGTACAAGCTTAGGTCCTACACTCTGAATGCTGTGAGTTTTCATTTCTTACAAGAACAGAAAGAAGACGTGCAGCATAGTATTATATCAGATTTACAGAATGGTAGTGACCAGACACGTCGCCGCCTTGCTGTGTACTGCATGAAGGATGCCATATTGCCATTACGATTATTAGACAAACTGATGTGCGTCATTAATCACATGGAGATGGCCCGAGTAACTGGTGTACCGTTTAGTTATTTACTTTCTCGTGGGCAGCAGATCAAAGTTGTATCTCAATTGCTAAGAAAGACTAAAGAACAAGACCTTGTAATTCCTGCACAAAAAGCAGAAAGTGGAGATGAAACATATGAAGGAGCAACGGTCATAGAGCCTAACCGAGGATTCTATAATGTTCCCATAACAACCCTAGATTTCTCGTCACTATACCCATCAATCATGATGGCGCATAACCTGTGCTACACATCTCTACTTCATCCCTCACAAGTTAAAAATACTCCACCGGACCAGTTCATCAAGACGCCATCTGGTAACTACTTTGTCAAGTCCTCTGTCAGGAAAGGACTTTTACCAGAAATTTTGGAAAGTCTACTTTCTGCCAGGAAAAAGGCAAAGGCAGACTTGAAGAAAGAAACTGATCCATTCAAGAAAAAGGTGCTCGATGGCCGTCAGTTGGCTCTAAAAATCAGTGCAAACTCTGTCTATGGATTCACTGGTGCAACAGTTGGTAAACTGCCGTGTTTGGAGATCTCACAGAGTGTAACAGCATTTGGTCGAATGATGATCGAAAGAACTAAAGAACTTGTTGAGGAGAAATACAAGATTGCTAATGGCTACAAACATGATGCTAAGGTTATTTATGGAGACACAGATTCAGTCATGGTCCGATTTGGAGTCGAGACGGTAGCCGAGAGCATGGAACTCGGTACTGAAGCCGCACAACATATTTCTGGTCATTTTGTTTCACCAATTAAGCTGGAGTTTGAAAAGGTGTATTTCCCTTATCTACTGATCAACAAGAAGAGATACGCTGGACTGTACTTCACTAAACCGGATAAATATGACAAAATGGACTGTAAAGGGATTGAAACAGTGCGTAGAGATAACTGTCCCCTTGTTGCAAACTTGATTGGCTCATGTTTGAAGAAGTTGTTGATTGGAAGGGATCCCCAAGGAGCAATAGCGTACACAAAGCAGGTTATCTCAGATCTGTTGTGTAACCGTATTGACATCTCTCAGCTGGTCATCACTAAAGAACTCACTAAGAGTGGCGATGAATACGCCGCTAAACAAGCGCATGCGGAGCTGGCTGCAAGGATGCGCAAAAGAGATGCTGGTTCTGCGCCTAAACTTGGTGATCGTGTACCTTATGTCATTATCGCTGGGTCTAAGGGAGCTAAGGCTTATGAGAAGGCTGAGGATCCTATATATGTACTGGAGAACAACATTCCTATAGACACCCAGTACTACCTTGAAAACCAGTTGTCAAAACCTTTACTGAGGATCTTTGAACCAATCCTGGGTGAAAGCAAAGCTACCTCTGTCCTCCTTAAGGGTGAACACACACGGACAAAGACCATTGTAACGTCAACTATAGGAAAGCTATCCATGTTCACGACGAAGAAAAACACATGTCTTGGATGTAGGAGTAGTCTAGACGACGATGCTGCCGTGCTGTGCAAGCACTGCAAGCCAAGGGAATCAGAAATCTTTCAGAAAGAGATTGGACACCTGAAAACTTTAGAGGAAAGATTTGCAAGACTTTGGACCCAGTGTCAGAATTGTACGGACAGTCTTCATCAAGATGTCCTTTGCACAAGCCGTGACTGTCCAATTTTCTATATGAGAACAAAAGTTCAAAAAGACGTCACGGCTCAAGACAAACTGGTGTCGCGTTTTGGTTCCTGTGCCTGGTGAAACACTTCACTTTACAACTCATTCTCAGAAGGTACAGCGAACTATCTCAGAGACACATCCAATGGGCTAGCAGTTGCGCTCTGTCTCACAGAGGTGTCGGTTTTTATGAGAATATAATGACAATGAAATGTCCACAATTTGTCTGTGTGGGGTTCCTGAGTGATCTTGTCATAGTGTCCATGGTAAATGCAGTATATTGTAATTGACTGAAAAAATCACCACACGGGAATGCACTGCCATGCATACCAGTGTCAGCTCTGTGTTGTGTTCTATGCCGTGTCTGCACCATGCCGTGACAATGATGTGTGCCATGTATCCTGCTCGGCAGGCATTGCAGTGTCTTCATTGTATCAGGAATGTTTTTGGCTATTTTTCCAAGTGTGGTATACCTGTGTTAATATTGTCCGAGTTCCTGTAAATAGTCTGGGTACTAAATCATTTACATATAAGTCATTTGTTTTATTTTACTTGAATGTGACTGGTGCTGTCACATGATATACTTTATACATTACAATTGTGCCTTACCCTACCCCCCTAGGGATATACAGCAACGAATAAAGCAGTGTTGAAAAGAAGAAATTTAATAATAAAACATATTTGATTATTTGGTTGAAATAGTTATTAAGAAGAAGAAAAAATGGATCCCAAGATTGTTTTTCGTTTGTTGAACACAGGGATCCCGACATTGTTCAACACAGGGATCCCGACATTGTTCAACACAGGGATCCCGAGATTGTTTTTCGTTTGTTTAACACATGGATCCCATGTGTAAATTTTTGTCAGAAACGCAGGGAATACAAGTCTGTTAAAGTCAATTGAAGAGATCAAGACTGTGTTGACTAATAACAAAAGCATTGCAATGCTGTTTTAAAATCTTGAATTGTGACACAGGAATCCCAAAATAACTAACTTGATTAGTGGCACAGGGATCCCAATGGGGGAAGGCCCAAGATTATATATTTTAACACAGGAATCCCATTCATATTGGACTTTTAAGTTACTCTGGTTAGTCGTGTATATCCCTCAAGTATTGAGTTCTTATAATGATATTTAAAAAATATGAAATTTTCTCAGTGGTAACCATGCCAACATACCACGAGACAAAATCACCAAATTCCCATAAAACCTGAAAATGCTACAAAAAATATAATTTCAATGTCTATATTAGAGGGCGATAAGCCCTTTTCTTCATTCCCTTTGGTTCTTTCTCCCTTGATCTAATTTTGAAATTCAATTTGAAATTGAAAATAAATATTTGAGAAATTCTGACATTTAAACTGGAAGAGAACGAACCCGGTAGTCCAATAAATATCCAGTAAACTGGAAACATTGCATGTTAGCCATTGGTTGAGTGTATTGGTTGGTTGGTTGGTTGATTGGTTGGTCTGGACAACAAATTTCTTTGGCCATGAATAAGATACATCTTGGACCAGAAATTCCAAAATAAATTATGTTTCTCTTGAAATGCAAATATGTAATGCATTGGTAGAAACGGCCTCTCAATCCACAACAATTGAATTAGGGTTGTGTACCATAAACCTATTGTATTCTCTGATAGCATTGTTCTATCATATAACTGAAGTCTTGTTGTTTCTGTTGAATTTCGTAAACTGTGTTACGGTACACGGAGGAGCTCTCTAAGTATTGACCAGAAGTAACTTGAAGTACATAATTTGTCTTGATAGAGAATGCAAATATAATCAACCGTAAATAAGTTGACCAAGTGAAATATCTTGCGAAGGGTGAATGACGACTTGCTTTAACATGCTTGGTTGTGGTCATTGACCAATAGATTACTAGTAGTGAAGAAACATTTGCTGGTTAACGCTAGAGTTCGGGTTTGACCATTTTCACAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54358	DNA polymerase delta catalytic subunit OS=Drosophila melanogaster OX=7227 GN=PolD1 PE=1 SV=2
P97283	DNA polymerase delta catalytic subunit OS=Mesocricetus auratus OX=10036 GN=POLD1 PE=2 SV=1
P28339	DNA polymerase delta catalytic subunit OS=Bos taurus OX=9913 GN=POLD1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003781 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136 all species →	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF03104 all species →	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan
PF14260 all species →	zf-C4pol	C4-type zinc-finger of DNA polymerase delta	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006134 all species →	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR006172 all species →	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR042087 all species →	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR006133 all species →	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR050240 all species →	Family	DNA polymerase type-B	Interproscan
IPR025687 all species →	Domain	C4-type zinc-finger of DNA polymerase delta	Interproscan
IPR017964 all species →	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10322 all species →	DNA POLYMERASE CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006287 all species →	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008296 all species →	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0043625 all species →	Cellular Component	delta DNA polymerase complex	Interproscan
GO:0045004 all species →	Biological Process	DNA replication proofreading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02327	POLD1; DNA polymerase delta subunit 1	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.