Detailed information of gene08827.t2 in Actinoscyphia liui

Genomic Location: chr11:15923128...15925626
NR annotation: KXJ09430.1, Retrovirus-related Pol polyprotein from transposon 17.6 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
P04323Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000011 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098
all species →		zf-CCHCZinc knuckleDomainInterproscan
PF00665
all species →		rveIntegrase core domainDomainInterproscan
PF17921
all species →		Integrase_H2C2Integrase zinc binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036875
all species →		Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878
all species →		DomainZinc finger, CCHC-typeInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001584
all species →		DomainIntegrase, catalytic coreInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397
all species →		Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR021109
all species →		Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR041588
all species →		DomainIntegrase zinc-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46888
all species →		ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0015074
all species →		Biological ProcessDNA integrationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene08827.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP