Detailed information of gene08883.t1 in Actinoscyphia liui

Genomic Location: chr11:16746711...16755852
NR annotation: XP_031549547.1, DNA damage-binding protein 1-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P6Z0DNA damage-binding protein 1 OS=Xenopus laevis OX=8355 GN=ddb1 PE=2 SV=1
Q5R649DNA damage-binding protein 1 OS=Pongo abelii OX=9601 GN=DDB1 PE=2 SV=1
A1A4K3DNA damage-binding protein 1 OS=Bos taurus OX=9913 GN=DDB1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003786 (this species only)
Ubiquitin familyE3|E3 adaptor Cullin RING|DDB1 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10433
all species →		MMS1_NMono-functional DNA-alkylating methyl methanesulfonate N-termRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050358
all species →		FamilyRSE1/DDB1/CFT1/CPSF1Interproscan
IPR018846
all species →		DomainCleavage/polyadenylation specificity factor, A subunit, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10644
all species →		DNA REPAIR/RNA PROCESSING CPSF FAMILYInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0035861
all species →		Cellular Componentsite of double-strand breakInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene08883.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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