Gene detail

Detailed information of gene08916.t1 in Actinoscyphia liui

Genomic Location: chr11:17227623...17244173
NR annotation: XP_031549437.1, RNA cytidine acetyltransferase-like [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08916.t1

ATGGTTCTGAAGAAAGTCGATAATCGCATTCGAATTCTCATCGATAATGGCGTGCAAACGAAGCATAGATCGTTGTTTGTGGTTGTTGGAGACAAAGGCAAAGATCAGGTTGTCATACTCCATCATATGTTGTCCAAGGCTTCAGTTAAAGCAAGGCCTACAGTGTTATGGTGTTACAAGAAAGAGTTAGGGTTTAGTAGTCATCGAAAAAAGAGAATGAAGCAGCTGCAAAAGAAGATAAAGAGTGGCACCCTTGACGTCAAGAATGACGACCCTTTTGAACTTTTCGTCTCAGCCACAAACATCCGCTACTGTTACTATAATGAAACACATAAAATACTTGGAAATACTTATGGCATGTGTGTCCTTCAAGATTTTGAAGCCATCACTCCCAACCTTTTGGCACGTACAATAGAGACAGTAGAAGGTGGAGGTATTGCGGTGATTTTACTGAGAACAATGTCATCACTGAAACAACTGTATGCAATGTCCATGGATGTACATGCTAGGTACAGAACAGAGGCACACCAAGATGTTGTTGGTAGATTTAATGAAAGGTTTTTACTATCCCTGACATCTTGTAAGAAGTGTTTGGTTATAGATGACCAGTTGAACCTGTTACCATTCTCATCCCATATGGTGAATATCGCTGCAATACCACCAAAGTCCAAGGAAGAGTCAAAGTCAGCCAATGAAATTGAAATCCAACATCTAAAAGAATCTCTACAGGACACCCAGCCTGTAGGAACACTAGTCAACTGCTGTAAAACACTTGATCAGGCCAAAGCACTGTTAAAATTCATAGAAGCAATTTCAGAGAAGACATTGCGAACAACAGTATCTCTGACTGCAGCCCGTGGTAGAGGAAAGTCTGCTGCATTGGGTCTTGCTTTAGCTTCTGCTGTAGCATTTGGGTATTCCAATATGTTTGTGACTTCACCAAGCCCAGAGAATCTCCACACTCTTTTTGAGTTTATTTTTAAAGGTTTTGATGCATTAGACTACCAGGAACACATTGATTATGAATTGGTCCAATCCACCAACCCAGAGTTTAACAGAGCTGTCGTACGTGTGAACATATTTAAGGAGCATCGGCAAACAATCCAGTACATCCACCCTGCTGATGCTCAGAAACTTGGACAAGCTGAGTTAGTTTGTATCGATGAAGCTGCGGCAATACCGTTACCATTAGTTAAGAGTCTGCTTGGTCCATATCTAGTATTTATGTCATCTACTATTAATGGTTATGAAGGAACAGGGCGATCACTTTCTCTGAAACTAATAAACCAACTACGACAACAGAGCGTCCAACAAGGAGCAACAGCTACCAAATCTGTGTCCACTACTACCCCCATAGGACGAATTCTACATGAGGTCACACTAAATGAGTCTATTCGTTATGCACCAAGTGACGATGTGGAGAAATGGCTGAATGGACTTCTGTGTCTGGATGCTACTGTAGCAGTGAATATCAGTGGTGGGTGCCCTGTGCCTGACAAGTGTGAATTATATTATGTCAATAGAGATACTCTATTTTCTTATCACAAGGCATCTGAGGTTTTTCTACAAAGACTGATGGCTTTATATGTAGCATCTCACTACAAGAACTCACCTAACGATCTTCAGCTTCTCTCTGATGCCCCTGCGCACCATATTTTCTGTCTTCTTGGTCCAGTTGACCCAGCAACAAAAACCCTACCAGAGGTTTACTGTGTACTGCAGGTTGCCTTAGAAGGAGAGATTTCCAAATCCACCATCATGAATAGTCTGTCTAGTGGTAAACGAGCTGCTGGTGATCTCATACCATGGACTGTCTCACAACAGTTCAATGATCATGAGTTTGGCAGCTTGTCAGGAGCGAGAATCGTACGAATTGCAACTCATCCAGACTTCCAAGGGATGGGATATGGTCGCCGTGCTTTGCAACAGCTTATTCAGTATTACGAAGGAAAAATCCCAAGTTTGTCTGAAAATGGTGCAGAGAAGGATGAAATCAGCGCTTTGAATGACGATGAGGGTGTTAGTCTTCTAGAAGAAACCATCAGCCCTCGTGCCAATCTCCCTCCATTGCTGCTAAAACTAAGCGAGCGACGGGCCGAGAGACTGGACTACATTGGAGTGTCGTATGGACTTACGTCGAACTTACTAAGATTTTGGAAAAGAACAGGTTTTATTCCAGTGTATTTACGACAGACGCCGAATGACCTCACTGGGGAACATTCTTGTATCATGCTGCGCATTCTCAATGAAACAGAAGTGGAGTCGAGTGAAGACTGGTTACAAGCGTATTGGGAAGATTTTCGTCGTCGGTTCATATCTCTTCTCTCCTACCAATTCCATTCTTTCCATCCTTCCTTGGCTCTCAGCATCCTTCAACGCAAAGCATCGAAAATAAAGAAACAAGCCATTAATAACTCTGAGCTCGAGTACTCAATGACAAAGTACGACATCAAGAGGTTGGACCTGTACTCTAGGAATATGGCAGACCATCACCTCATTACAGACCTGTTACCTGAAACTGCGAGGTTATTCTTTATGAATAAATTAGATTTCTCTTTGTCAGCTGTTCAGTCGGCAATTCTTCTTGGTGTTGGCTTACAGCATAAAACATTTGATGACCTTGAAAAAGAGCTAGAGCTGCCTGCAAGTCAGTTACTTGGTCTTTTTAACAGATTGGCTAGAAAGGTCGTCCAGTGTTTTAATGCAGTACTTGAGTCAGCCATTGAAAAAGAAATCGTTAAACAGAGAGAGGTTACCATGGAACCTTTAGCGAAGACTCTGAATCAAGATTTGGATGAAGCGGCAAAAGAAATGGAAGCAAAGCAGAAAAAGGAATTAGAACAACTGAAAGCTTTAGACTTGGCTGAGTACGCCATTTCTGGTAAAGATGACGAGTGGAGTACGGCTCTGGGAGGCAAAGGAAAACAACAGTCTATCGTTAGCATACCAAGTGCAAAGAGAAAGGCTCAGGTGCCACCAGAGGAAACTAAATCACAAAAGAAAACCAAGAAATCGAAGAAGCATAAAAAAGTGAAAACAACTTAG

Transcript

gene08916.t1

CAAATATGGTTCTGAAGAAAGTCGATAATCGCATTCGAATTCTCATCGATAATGGCGTGCAAACGAAGCATAGATCGTTGTTTGTGGTTGTTGGAGACAAAGGCAAAGATCAGGTTGTCATACTCCATCATATGTTGTCCAAGGCTTCAGTTAAAGCAAGGCCTACAGTGTTATGGTGTTACAAGAAAGAGTTAGGGTTTAGTAGTCATCGAAAAAAGAGAATGAAGCAGCTGCAAAAGAAGATAAAGAGTGGCACCCTTGACGTCAAGAATGACGACCCTTTTGAACTTTTCGTCTCAGCCACAAACATCCGCTACTGTTACTATAATGAAACACATAAAATACTTGGAAATACTTATGGCATGTGTGTCCTTCAAGATTTTGAAGCCATCACTCCCAACCTTTTGGCACGTACAATAGAGACAGTAGAAGGTGGAGGTATTGCGGTGATTTTACTGAGAACAATGTCATCACTGAAACAACTGTATGCAATGTCCATGGATGTACATGCTAGGTACAGAACAGAGGCACACCAAGATGTTGTTGGTAGATTTAATGAAAGGTTTTTACTATCCCTGACATCTTGTAAGAAGTGTTTGGTTATAGATGACCAGTTGAACCTGTTACCATTCTCATCCCATATGGTGAATATCGCTGCAATACCACCAAAGTCCAAGGAAGAGTCAAAGTCAGCCAATGAAATTGAAATCCAACATCTAAAAGAATCTCTACAGGACACCCAGCCTGTAGGAACACTAGTCAACTGCTGTAAAACACTTGATCAGGCCAAAGCACTGTTAAAATTCATAGAAGCAATTTCAGAGAAGACATTGCGAACAACAGTATCTCTGACTGCAGCCCGTGGTAGAGGAAAGTCTGCTGCATTGGGTCTTGCTTTAGCTTCTGCTGTAGCATTTGGGTATTCCAATATGTTTGTGACTTCACCAAGCCCAGAGAATCTCCACACTCTTTTTGAGTTTATTTTTAAAGGTTTTGATGCATTAGACTACCAGGAACACATTGATTATGAATTGGTCCAATCCACCAACCCAGAGTTTAACAGAGCTGTCGTACGTGTGAACATATTTAAGGAGCATCGGCAAACAATCCAGTACATCCACCCTGCTGATGCTCAGAAACTTGGACAAGCTGAGTTAGTTTGTATCGATGAAGCTGCGGCAATACCGTTACCATTAGTTAAGAGTCTGCTTGGTCCATATCTAGTATTTATGTCATCTACTATTAATGGTTATGAAGGAACAGGGCGATCACTTTCTCTGAAACTAATAAACCAACTACGACAACAGAGCGTCCAACAAGGAGCAACAGCTACCAAATCTGTGTCCACTACTACCCCCATAGGACGAATTCTACATGAGGTCACACTAAATGAGTCTATTCGTTATGCACCAAGTGACGATGTGGAGAAATGGCTGAATGGACTTCTGTGTCTGGATGCTACTGTAGCAGTGAATATCAGTGGTGGGTGCCCTGTGCCTGACAAGTGTGAATTATATTATGTCAATAGAGATACTCTATTTTCTTATCACAAGGCATCTGAGGTTTTTCTACAAAGACTGATGGCTTTATATGTAGCATCTCACTACAAGAACTCACCTAACGATCTTCAGCTTCTCTCTGATGCCCCTGCGCACCATATTTTCTGTCTTCTTGGTCCAGTTGACCCAGCAACAAAAACCCTACCAGAGGTTTACTGTGTACTGCAGGTTGCCTTAGAAGGAGAGATTTCCAAATCCACCATCATGAATAGTCTGTCTAGTGGTAAACGAGCTGCTGGTGATCTCATACCATGGACTGTCTCACAACAGTTCAATGATCATGAGTTTGGCAGCTTGTCAGGAGCGAGAATCGTACGAATTGCAACTCATCCAGACTTCCAAGGGATGGGATATGGTCGCCGTGCTTTGCAACAGCTTATTCAGTATTACGAAGGAAAAATCCCAAGTTTGTCTGAAAATGGTGCAGAGAAGGATGAAATCAGCGCTTTGAATGACGATGAGGGTGTTAGTCTTCTAGAAGAAACCATCAGCCCTCGTGCCAATCTCCCTCCATTGCTGCTAAAACTAAGCGAGCGACGGGCCGAGAGACTGGACTACATTGGAGTGTCGTATGGACTTACGTCGAACTTACTAAGATTTTGGAAAAGAACAGGTTTTATTCCAGTGTATTTACGACAGACGCCGAATGACCTCACTGGGGAACATTCTTGTATCATGCTGCGCATTCTCAATGAAACAGAAGTGGAGTCGAGTGAAGACTGGTTACAAGCGTATTGGGAAGATTTTCGTCGTCGGTTCATATCTCTTCTCTCCTACCAATTCCATTCTTTCCATCCTTCCTTGGCTCTCAGCATCCTTCAACGCAAAGCATCGAAAATAAAGAAACAAGCCATTAATAACTCTGAGCTCGAGTACTCAATGACAAAGTACGACATCAAGAGGTTGGACCTGTACTCTAGGAATATGGCAGACCATCACCTCATTACAGACCTGTTACCTGAAACTGCGAGGTTATTCTTTATGAATAAATTAGATTTCTCTTTGTCAGCTGTTCAGTCGGCAATTCTTCTTGGTGTTGGCTTACAGCATAAAACATTTGATGACCTTGAAAAAGAGCTAGAGCTGCCTGCAAGTCAGTTACTTGGTCTTTTTAACAGATTGGCTAGAAAGGTCGTCCAGTGTTTTAATGCAGTACTTGAGTCAGCCATTGAAAAAGAAATCGTTAAACAGAGAGAGGTTACCATGGAACCTTTAGCGAAGACTCTGAATCAAGATTTGGATGAAGCGGCAAAAGAAATGGAAGCAAAGCAGAAAAAGGAATTAGAACAACTGAAAGCTTTAGACTTGGCTGAGTACGCCATTTCTGGTAAAGATGACGAGTGGAGTACGGCTCTGGGAGGCAAAGGAAAACAACAGTCTATCGTTAGCATACCAAGTGCAAAGAGAAAGGCTCAGGTGCCACCAGAGGAAACTAAATCACAAAAGAAAACCAAGAAATCGAAGAAGCATAAAAAAGTGAAAACAACTTAGTTTGTCACACCCTTGTGAACGAACACAGCTTGTTGTCTTCCCTTACTTACCCCTCCCCCTGCACAAAAACTGGATAGCAACATATACTTACCCCACCCCCCTCACACCAGATAAATAGAATTCCATGGAAACAGTGAATGGAGTGTATTGTTGTAATAAAGTTTTAAGGAGTTTTCACAGAAATCTAGAAATTGGTTGTTGTGGAAATCTGACTGTCTTTTACAGAGCTTATTACTCAGGTTATGTGGCTGGTAATTATGAGAGCTTTTGGTACAAGTACGCAGTCGCAGCCAGAGTAAGACTGAGGATGTAGGAAGAGAGAGACTGGGGTAAACAGTAAGAGAGAGACTGGAGTGAAAACAAGATTGACGGAGGTCCGATGGAGTAATTGAAGAATGCCCACAGGTAGCCCAAGCTCTGCATCTGTGATTATTAACATAGAAGCTCATGTTACAAAAACCTCGCGTAAACTCGCTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H0A0	RNA cytidine acetyltransferase OS=Homo sapiens OX=9606 GN=NAT10 PE=1 SV=2
Q8K224	RNA cytidine acetyltransferase OS=Mus musculus OX=10090 GN=Nat10 PE=1 SV=1
Q55EJ3	RNA cytidine acetyltransferase OS=Dictyostelium discoideum OX=44689 GN=nat10 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003822 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05127 all species →	Helicase_RecD	Helicase	Domain	Interproscan
PF13725 all species →	tRNA_bind_2	Possible tRNA binding domain	Family	Interproscan
PF13718 all species →	GNAT_acetyltr_2	GNAT acetyltransferase 2	Family	Interproscan
PF08351 all species →	TmcA_N	tRNA(Met) cytidine acetyltransferase TmcA, N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR007807 all species →	Domain	Helicase domain	Interproscan
IPR032672 all species →	Family	TmcA/NAT10/Kre33	Interproscan
IPR027992 all species →	Domain	Possible tRNA binding domain	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR013562 all species →	Domain	tRNA(Met) cytidine acetyltransferase TmcA, N-terminal	Interproscan
IPR033688 all species →	Family	RNA cytidine acetyltransferase NAT10	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10925 all species →	N-ACETYLTRANSFERASE 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0008080 all species →	Molecular Function	N-acetyltransferase activity	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:1904812 all species →	Biological Process	rRNA acetylation involved in maturation of SSU-rRNA	Interproscan
GO:1990883 all species →	Molecular Function	rRNA cytidine N-acetyltransferase activity	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016072 all species →	Biological Process	rRNA metabolic process	Interproscan
GO:0034470 all species →	Biological Process	obsolete ncRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14521	NAT10, KRE33; N-acetyltransferase 10	EC:2.3.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.