Gene detail

Detailed information of gene08963.t1 in Actinoscyphia liui

Genomic Location: chr11:18175116...18177741
NR annotation: XP_020627207.1, uncharacterized protein LOC110064491, partial [Orbicella faveolata]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08963.t1

ATGGAACATATCCTACGAGGACTGAACTGGAAACTTTGCCTAATTTATATAGACGACGACATCATCATTTTTTCAGGCCATTTTGAAGAACATCTGAAACACCTGGAATTAGTTTTTCTTCGACTGCGCGAAGCTAGTGTGAGGTTAAAGCCCTCGAAATGCATTTTCGCTCGGCCCCAGGTCGATTATTTGGGACATGTTGTCTCCAAACTAGGTGTTCACCCTAACCCAGCAAAGACAAGAGCGGTGGATACTTTTCCTGCCCCTCGAACAGTTAAACAGAATGGCCGTGAGATCGCTATTGCCTATGCTGGCCGAGATTTATCAAAAGCAGAACGGGCGTACTCAGCCACAGAGAGAGAAGCACTCTCTATTGTGGCTGGAATTAAGAAGTTTCAGTCCTACCTATATGGTAGAACATTCGTGGTCCACACCGACCATAGTGCCTTAAAATGGCTCATGACAATAAAGGAACCAACTGGTCGGTTAGCAAGATGGTCACTACTTCTACAACAACACGACTTTAAAATCGAACACAGAGCTGGGAAACTTAACGGAAATGCCGATGCTCTCTCTCGTAGACCTTATAATATTGTAAGTACAATAGCCTCTGTAGAAGTGCCCCTAGAAAGGGTAAAACACCATCAAAGACGTGACCCTGACCTCGCAGATATGATCACGTTTCTTGACCATGACGTCCTACCTAAGAATGATACTCTGGCACGTAGAATTCTTCTAAAAAACGACGTGTTCTTCATGAGTGAGGACGGACTTTTGTTCCATATCGCCACACCAACTAGTAGACGCCAGAAAGGAACTTATGCCCAATTGGTCATCCCTAGTGCTATACGGCATGAAGTTTTGGTTCACGTTCACGACAGTGTTCTAGCTGGACACCTAGGAGTATATAAGACCTATGAAAAGTTGCGTGACCGTTACTACTGGCAAGGCATGTACAGAGATATCGAGCACTGGTGTAAGTCGTGTGTCGCCTGTGCCATGCGTAAAACTCCCAGTAGACATCCTAAAGCTCCCCTATTGCCAATTCCAGTAGAAGGACCGTTTCATCGAGTTGCCGTAGATGTGTTAGGTCCGTTGACACCCACCGATGCTGGAAATCGCTGTATTGTGGTATTCACGGACTATCTCACTAGATGGCCTGAATGCTTCGCCGTTAAAACCACCGATGCATTGGTAGTAGCACGTCTTCTAGTTGACGAAATAATAGCTCGACATGGAGCTCCACGAACCTTGTTATCAGACAGAGGAGCAAACTTTCTCTCGGAAATGGTGGCTATGACTTGCCGTCTGTTTGATATCAAAAAGATCAACACAATGGCATACCATCCACAGACAGATGGCCTGGTAGAACGTTTCAACGGCACACTGGCTCAGACTCTGTCTATGTATGTTAGTCGAAACCAAAAAGACTGGGATATGTATATCCCTACAGCACTTTTTGCCTACCGCACTTCAGTATCAGAAGCCACCGGAGAAACTCCCTTCTATTTGTTGTATGGTAGAGAACCAAGACTCCCTATGGATGTCAATCTACTACCAACAAAATCGTTATCAACTTCCGTAGCGGAACATCGTAAGCGATTGGTAGAAAATATTGAAGAATGCCAACGAATTGCCCTTGATGTTAACATCCAAAGAAGCCAACAAAAGATGAAAGCTTATTATGACCGCAATGCCAAAACCCCACATTTTGAGGCTGGAGACAAAGTTTGGGTGTATACACCACAATTCCGACGTGGTTTGTCTCGTAAGCTTCAACATCGCTGGCACGGTCCCTATAGAGTGATAAAACAACTTTCCCCAGTGCACTTCCGGTTATGGACTTGCCATTCTAACCGGGAGGTGACCACCAATGTCCACGCAAATCGCATGAAGATTTGTGTCGATCCACTCGATAGACCAATTACACCACTAGAAGATGACGACGAAATTATTCCGCAGTTAAGAGACGAGGATTTGCCTCCAGACAGTTTTTCTCCTCCAGTTTCAGACCCCTTACATCCTGTTGATGCACCTCAGCAGAGTACCGTGGAATTTAATGCACCGTCAGTTAACCATGCTCAACAGCCAACTGACACCGAAACACCCCCAGAGTTGACCGATATTGCTGTCTTGGGAACAAATCCTTCTGACAATGATCTAGCGACACTGCTCAATTCCCCGGATGTTTATATTGTCGATCAGATCCTGCGCAAGCGTACTCGCGCGGGAAAGACCCAATACTTAGTAAAATGGAAGGGTTACCCCACCTCACAGAGTACTTGGGAACCCGAAGATAATATTTTCAACCCTCAACTTATTGAATCCTTCAATAATACGAATCGTTCTTGTCCACAGGACAACTGA

Transcript

gene08963.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
Q13185	Chromobox protein homolog 3 OS=Homo sapiens OX=9606 GN=CBX3 PE=1 SV=4
Q5R6X7	Chromobox protein homolog 3 OS=Pongo abelii OX=9601 GN=CBX3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene08963.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.