Gene detail

Detailed information of gene08992.t1 in Actinoscyphia liui

Genomic Location: chr11:18832897...18851573
NR annotation: XP_028515683.1, cytoskeleton-associated protein 5 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene08992.t1

ATGTTGTCCATTCTACAGGTCATGAAGTGGAACTTTGCCACCCCAAGAGATGAGTACATAGAACAGTTAAAGGAGCAGATGAGACCATGTTTTAGCAAAGCCATCATAACAAGCTTGTTCCATCCTAATGACTTTAAGCAACAAGTTAATGCTATGAGCACACTACAACAGGGCGTAACACCATGTGGTGATGAAGACCCACCCCTCAAGGAGGAAGCCATCCAGTCGCTGGACCTTATACTAAAGTATGTTACTTTACGGTTCTTTGATACCAATACCACGGTACTTGTAAAGTGTCTGGAATTCCTGGATACTTTATTTACCATGCTGGCAGAGTGTGCTTATCAGATGGTTGAACACGAAGCAACTAGTTTTATTCCTTACCTGGTACAAAAGGTTGGTGACCCAAAGGATGTAATGAGAAAGATGATCCGTAAGCTGTTTAAGCTGCTAACCAAGGTGTATCCTGCCAGTAAGATGTTTACCTATGTGTCAGAAGGTCTTCCCTCTAAGAACTCCAAGACACGCATGGAGTGTCTTGAGGAGTTAGGATGTCTAATCCAAGTGTTTGGTATGAATGTATGTCAACCTTCTCCCCCTAAAGCTATCGCTAACATAGCAGGCCAGATTGGTGACCGTGACAATGGTGTGCGTAATGCAGCCCTTAATACTGTAGTAGAGGCTTATTTCTTGATTGGTGAGACTGTCTATAAATATGCTGGAAGGCTGAGTGATAAGGATCTGGGGTACCTTGAAGAGCGTATCAAGAGATCATCAAAGAACAGACCACCATCTACCAGTGGTGGTAGTGAAGAACCAAAGCCAGTAGCTAAACCTCACAATGACAAGAAACCATCCAAGCCTGCTGCAAGGCCAGCCACTGCACCTGTAGCCAAGAGAGATGAGAACATAACGCGTGAATTCCAGATAGACTATGGTGCTATAGAAAGTGATCAAGACCAACAGGATATGGCCTTACCCAACCTTGTCTCACATGAAGAATCTGTAGATGAACTAATTAGTGAACCCATCCACAGACCAACAACCAAGACTGCCTCTTCCACTCACCTAGGAGTGTTCAGCAGGACGTCAGCACCAGCAGCTTTGAATTACGTCATCTCTCAGATAGCTAGTAGTGATATACGGGCTAGTACCCAGGCTATTGTACAGCTGGAAGTAGTGATAAGGAATAAGACTGGTGGAGAGATCCTCAAACACGTGGACCAGTTCTTAAATGCTGTATCTCTTCAACTAAACATCATCCTCACCACCCACCTAAGTAATGAAGATGAACCAGAAGAAACTATTACAAGACTTATCAACTGTCTGATTAATGCCATGCTTACCCTGTTCTGTAATGAACCACTGGCGAAAACAGTGTCATGTAATACCCTTAAACACCTGGCACAAGCCTTGATTACAGCAGTGTTGGACGACAGGCTTGCTAAACTACAAGATGGTGCACAGATTATTAGAGCTATTAATGTATTGGTTGTCAAGATGATACAGAGATCTGACCCTACTGTGTGCTCTTGTGCTATGATTAAACTGTTACAAGAAAGTGTTAAAATGCTACAAGGACATGCAGGAAGTTCTCTCAGCTCACCGAAATTCATGGAACTCACTATGAAGGCATTATGGAAGATGATACGCACCTTACCACAGATCATTGAAGATATTAAGATTGATCAAGTACTTGTAGCCATACACAAATTCTTAGTAGCCCATCCCCCTCAGGTATGGAAAGACCGTGCAGACGACACCCCCCTGAGAACAATACGCACCATACTACATTCTCTTGCCAAGCTGAAAGGCCTCGATATATTAGCCTGCACCAATCTTATTGAAGACTCTAATCAAAGTGAAGTAACGGCATACTTACATCGAGTCTTAAAGACTGGTTACAGACCTTCCACTAGTTCACAGATGAATGGCAATTCTGATGAAACTACCAATGAATCTGTACCATCGTCTACTCCTGATATACTAAAAGGAGTTGAGAATACCATACAAACCCCTGTAGCTAAGCTGAATTCCAAGCTGGCTGAGATATTTAGTAAAATAGCATCCAAAGAAAATACCAGAGAGGGCCTTGTACAACTGTACGAGTTTAAACTGACGTACCCACAAGCAGACATTGATCCTTTCCTCAAGAAAACCTCTCCGTACTTCCAAGGTTACATCGCTAGAGGTCTTGAAAACATCGAAAAGGAGAGAAAGAACAAGAAGAGTCCTACTATACTAACAGCACCAGCATCACAACCATCAGAGACGCCGTCGTCTTACTTGGATCGCCTACGTGTACTTCGAATGCGCTCTGGTCTTGGTGACAACACTAACACTGAAGATCAGAAACAAGATGCCATGCAATCAAGTCCCACAGAAGAGACATCGGACTTTAAAGGTTCTGTTGTTGAATTACGAGCAACAATCACTACAACTGCTACAGAACCAGACGATGAGCCTTCACCAGACACCTCGTCTAACTTACTGGACATCAAGAAACGTTTAGATAGAATCAAGAATGCTGCCCGACACTAA

Transcript

gene08992.t1

GTACACTGTACATGAATGTTGTCCATTCTACAGGTCATGAAGTGGAACTTTGCCACCCCAAGAGATGAGTACATAGAACAGTTAAAGGAGCAGATGAGACCATGTTTTAGCAAAGCCATCATAACAAGCTTGTTCCATCCTAATGACTTTAAGCAACAAGTTAATGCTATGAGCACACTACAACAGGGCGTAACACCATGTGGTGATGAAGACCCACCCCTCAAGGAGGAAGCCATCCAGTCGCTGGACCTTATACTAAAGTATGTTACTTTACGGTTCTTTGATACCAATACCACGGTACTTGTAAAGTGTCTGGAATTCCTGGATACTTTATTTACCATGCTGGCAGAGTGTGCTTATCAGATGGTTGAACACGAAGCAACTAGTTTTATTCCTTACCTGGTACAAAAGGTTGGTGACCCAAAGGATGTAATGAGAAAGATGATCCGTAAGCTGTTTAAGCTGCTAACCAAGGTGTATCCTGCCAGTAAGATGTTTACCTATGTGTCAGAAGGTCTTCCCTCTAAGAACTCCAAGACACGCATGGAGTGTCTTGAGGAGTTAGGATGTCTAATCCAAGTGTTTGGTATGAATGTATGTCAACCTTCTCCCCCTAAAGCTATCGCTAACATAGCAGGCCAGATTGGTGACCGTGACAATGGTGTGCGTAATGCAGCCCTTAATACTGTAGTAGAGGCTTATTTCTTGATTGGTGAGACTGTCTATAAATATGCTGGAAGGCTGAGTGATAAGGATCTGGGGTACCTTGAAGAGCGTATCAAGAGATCATCAAAGAACAGACCACCATCTACCAGTGGTGGTAGTGAAGAACCAAAGCCAGTAGCTAAACCTCACAATGACAAGAAACCATCCAAGCCTGCTGCAAGGCCAGCCACTGCACCTGTAGCCAAGAGAGATGAGAACATAACGCGTGAATTCCAGATAGACTATGGTGCTATAGAAAGTGATCAAGACCAACAGGATATGGCCTTACCCAACCTTGTCTCACATGAAGAATCTGTAGATGAACTAATTAGTGAACCCATCCACAGACCAACAACCAAGACTGCCTCTTCCACTCACCTAGGAGTGTTCAGCAGGACGTCAGCACCAGCAGCTTTGAATTACGTCATCTCTCAGATAGCTAGTAGTGATATACGGGCTAGTACCCAGGCTATTGTACAGCTGGAAGTAGTGATAAGGAATAAGACTGGTGGAGAGATCCTCAAACACGTGGACCAGTTCTTAAATGCTGTATCTCTTCAACTAAACATCATCCTCACCACCCACCTAAGTAATGAAGATGAACCAGAAGAAACTATTACAAGACTTATCAACTGTCTGATTAATGCCATGCTTACCCTGTTCTGTAATGAACCACTGGCGAAAACAGTGTCATGTAATACCCTTAAACACCTGGCACAAGCCTTGATTACAGCAGTGTTGGACGACAGGCTTGCTAAACTACAAGATGGTGCACAGATTATTAGAGCTATTAATGTATTGGTTGTCAAGATGATACAGAGATCTGACCCTACTGTGTGCTCTTGTGCTATGATTAAACTGTTACAAGAAAGTGTTAAAATGCTACAAGGACATGCAGGAAGTTCTCTCAGCTCACCGAAATTCATGGAACTCACTATGAAGGCATTATGGAAGATGATACGCACCTTACCACAGATCATTGAAGATATTAAGATTGATCAAGTACTTGTAGCCATACACAAATTCTTAGTAGCCCATCCCCCTCAGGTATGGAAAGACCGTGCAGACGACACCCCCCTGAGAACAATACGCACCATACTACATTCTCTTGCCAAGCTGAAAGGCCTCGATATATTAGCCTGCACCAATCTTATTGAAGACTCTAATCAAAGTGAAGTAACGGCATACTTACATCGAGTCTTAAAGACTGGTTACAGACCTTCCACTAGTTCACAGATGAATGGCAATTCTGATGAAACTACCAATGAATCTGTACCATCGTCTACTCCTGATATACTAAAAGGAGTTGAGAATACCATACAAACCCCTGTAGCTAAGCTGAATTCCAAGCTGGCTGAGATATTTAGTAAAATAGCATCCAAAGAAAATACCAGAGAGGGCCTTGTACAACTGTACGAGTTTAAACTGACGTACCCACAAGCAGACATTGATCCTTTCCTCAAGAAAACCTCTCCGTACTTCCAAGGTTACATCGCTAGAGGTCTTGAAAACATCGAAAAGGAGAGAAAGAACAAGAAGAGTCCTACTATACTAACAGCACCAGCATCACAACCATCAGAGACGCCGTCGTCTTACTTGGATCGCCTACGTGTACTTCGAATGCGCTCTGGTCTTGGTGACAACACTAACACTGAAGATCAGAAACAAGATGCCATGCAATCAAGTCCCACAGAAGAGACATCGGACTTTAAAGGTTCTGTTGTTGAATTACGAGCAACAATCACTACAACTGCTACAGAACCAGACGATGAGCCTTCACCAGACACCTCGTCTAACTTACTGGACATCAAGAAACGTTTAGATAGAATCAAGAATGCTGCCCGACACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14008	Cytoskeleton-associated protein 5 OS=Homo sapiens OX=9606 GN=CKAP5 PE=1 SV=3
A2AGT5	Cytoskeleton-associated protein 5 OS=Mus musculus OX=10090 GN=Ckap5 PE=1 SV=1
Q9PT63	Cytoskeleton-associated protein 5-A OS=Xenopus laevis OX=8355 GN=ckap5-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002782 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21041 all species →	XMAP215_CLASP_TOG	XMAP215/Dis1/CLASP, TOG domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048491 all species →	Domain	XMAP215/Dis1/CLASP, TOG domain	Interproscan
IPR034085 all species →	Domain	TOG domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR045110 all species →	Family	XMAP215	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12609 all species →	MICROTUBULE ASSOCIATED PROTEIN XMAP215	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007051 all species →	Biological Process	spindle organization	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030951 all species →	Biological Process	establishment or maintenance of microtubule cytoskeleton polarity	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0046785 all species →	Biological Process	microtubule polymerization	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan
GO:0051298 all species →	Biological Process	centrosome duplication	Interproscan
GO:0061863 all species →	Molecular Function	microtubule plus end polymerase	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene08992.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.