Gene detail

Detailed information of gene09166.t1 in Actinoscyphia liui

Genomic Location: chr11:23419685...23424948
NR annotation: XP_022784874.1, uncharacterized protein LOC111325332 [Stylophora pistillata]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene09166.t1

ATGGCAAACGGACGCGGTAAATTTAGCTCCGTTCTAATCTACCTAGTTCTCCTCTGCATAACTCATAATTCCGAGTGGAAATCTTGCCTACGTGAAGACTTGGAAGTTATAACAGGAATTACGACGCAAAGTATCTACCGAGACGATTTTTGGCCGCCTTTGCTTGTGCTAGAAAGAAATTACAGACGCCATCTTGGATATATTTGGACTTCTTCTAGAGGTCATTACTTTGGCCGCAGAGTGACCCGTTATCCAAACAGTGTTTCAACGTTTCAACTTGATCGGCTATTTATTAGCTGGGACGTAAACTTGAACCCTGGTCCAAGCACAGGGAAACCAAGTTGTCATACATGTTTGAGAACTATTGCTCGTAATCACCGGTCGCTAAATTGCAATTTATGTGCCCTCAAATATCATATTAAATGTGGAAAAGTGACGCCAAAGCAATTTAAACAAATTCAAACAAATGACCCAAAGACCTGGATTTGTCCTAGTTGTTTAATACAGCAGCCTACGCAAGAATGTGATTCGAATATAGATGTTCTATCTTCCCTTCCATTTGCCTCTGTGACAAATATACCATCCTTATTTACAGCAGAGTCTGCTTTGAACAATATTCCGAACCAGCCTTGCTATGGAGAAGAAGAAGGTGAGAGCCATCTAGCAGATCTAGTGCAACAATTGGAACTTAGTTCAAGGAAGGATTTAAGAATGGCTCACTTAAATGTGTGCAGCTTGAGAAACAAGATCGAGGAATTAAGGTGTTTACAACTACTATGCAAATTCGAGATCCTTGCTATAACTGAAACACATCTAGATAAATCTATCAGTGATACAACAATCAATATCGATGGAATGAAGTTCATAAGACTTGATCGAAAGGAGCGTAAGGGCGGTGGATGTATGCTTTATTATGCAGAGCACTTACAAGCAACTCATCGAAAAGATTTGTTCACCAAAGGATTGGAAGCTATCTGGTTACAAGTCAAATTCCCCAGCACATCTGTTTTGTTTTCAGTCATTTACAGGCCACCAGACGCTAACCAGTTCTTCAATCTCATTGGTTCTCCACTTGAAAAGGCTTGGCTAAAAACATCCAATATTGTGCTATTAGGGGATTTCAATTGTAACTTTGCATCTCAAGACGGTATTTCTACCCCCCTGAACACTAACGCAGAAAAATTACGCTCAGTTTTCGACATGTTTAATATGCAAAATGTCACCATGGAAGACACAAGAATAACATTGACATCATGCTCCCTGATAGACCTTATTGTTACAACAAGAAAAGACCTAATCAGTTCCACAGGAGTATTTCCTTTGGGGATTTCGGATCATAATTTAATATTTGCCACAATAAGACTAAAGAACAAAAGACCTCCACCAAAGTACATCAAAACAAGAGATTATAAGAGCCTCGATGTGGATAAATTTAGATATGATATACAAACTGCGCCGTTTCACATCGCTTCAGTTTTTGATGATGCAGATGATACTCTGTGGGCATGGCAAAAATTGTATACCGATGTATGTGACGAACACGCTCCTTGGAAAGAAGTTAAGATTAGAAGTAAGTCTGCACCATGGATAACAAACGACATTAGATACAAAATGAACCGAAGGTATAAATTATTTAAAACAGCGATTACAACTAAATGCCCAACATCGTGGCAAGAGTACAAAAAAGCGAGAAACGAAGTCACCTCGGCCATAAGAGAAGCTAAAGCATCTTATTTATCCAAAATGTTTAAAGAAGTCAAGAAAACGAGTGCTTATTGGAATCTACTTAACAAAGCTACCAACCCTACAGTGCATAAGAAGATCGGACCACTAAAGAGAGATGACGGTAGTCTTGTACTGGTTGATGAAGAGAAAGCTTGCCGGATGAATTTATACTTTGCTACGATTGGAAAAAAATTGGCTAATGCGCTACCAAAGCCAGTGGATGACAAACAACAATCTATTCAGGAAGCTCAAAGTGTACCACCATCTCTCGCAGAGATCAAAATCTCGCACCGATCAGTACAAGGAAAAGTCGACTTGCTTAAACCCAACAAGTCTACAGGTCCCGATGATATTTCTCCAAAACTTCTAAAACTAGCGGGAAACGCCATTGTTCCATCCTTGATTACTCTATATCAATATAGTATTGACCGCAACACTGTATTCTCCATGTGGAAGACAGCAAGAATCACGCCAATATTTAAAAAAGACGACGAAACAGACTGTGGAAACTACCGTCCAATCTCTCTACTAAGCGTCCCAATAGACGGCATGGCCGTTACTACAGTTGAAGGGATTGGATCCACAAAAACAAGGCTTCATCCAGTACAGGAGAGGCTTGCGAAGGCTCATGGCTCTCAGTGTGGTTTTTGTACTCCTGGTATTGTGATGTCTATGTACACATTGTTGAGGAATAACCCTTTGCCTGCCATGAAAGACATGGAGAGTGCTTTCGAAGGTAATATAAATAATAGTCAAGATCTCGACTCATGA

Transcript

gene09166.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47989	Xanthine dehydrogenase/oxidase OS=Homo sapiens OX=9606 GN=XDH PE=1 SV=4
P10351	Xanthine dehydrogenase OS=Drosophila melanogaster OX=7227 GN=ry PE=2 SV=2
P08793	Xanthine dehydrogenase OS=Calliphora vicina OX=7373 GN=XDH PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000140 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF01799 all species →	Fer2_2	[2Fe-2S] binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002888 all species →	Domain	[2Fe-2S]-binding	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR036884 all species →	Homologous_superfamily	[2Fe-2S]-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene09166.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.