Detailed information of gene09182.t1 in Actinoscyphia liui

Genomic Location: chr11:23936795...23952500
NR annotation: KAJ7339684.1, hypothetical protein OS493_006094 [Desmophyllum pertusum]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A1A4K8Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1
Q9D883Splicing factor U2AF 35 kDa subunit OS=Mus musculus OX=10090 GN=U2af1 PE=1 SV=4
Q01081Splicing factor U2AF 35 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000070 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076
all species →		RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003954
all species →		DomainRNA recognition motif domain, eukaryoteInterproscan
IPR000504
all species →		DomainRNA recognition motif domainInterproscan
IPR009145
all species →		FamilyU2 auxiliary factor small subunitInterproscan
IPR035979
all species →		Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12620
all species →		U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681
all species →		Cellular Componentspliceosomal complexInterproscan
GO:0030628
all species →		Molecular Functionpre-mRNA 3'-splice site bindingInterproscan
GO:0089701
all species →		Cellular ComponentU2AF complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene09182.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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