Gene detail

Detailed information of gene09293.t2 in Actinoscyphia liui

Genomic Location: chr3:1963654...1972862
NR annotation: KXJ16534.1, Dermatan-sulfate epimerase-like protein [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene09293.t2

ATGACGAATGCGCTTACTTGCTTGGTATTAATCACTCTTTTGATTTTTATAAAACCTGAGGCATCACCCTCTACAAACAGTGGACATCCATTTTTGTATTACTCTAGGGATGATGAGAACAGTCTCAGATACAAGGCGCACACTTCACACAATCACGTTTTTCAGAAACTGAGAGAAGCTGCCGAAGAGTTGAAACGACATCCTAATGATGTTCTTCCTTCAGTAAATTGGACCGAATTTTCGAACTCCTGGAACGAGAATTATGGAAACAACTTGGTTGCTCTAGCGTTTTATTGCGTACTGAATGGTTCAGACCTTGTTGCCCTTGACATGGCTAAAGCTGCTATATCAAGATTCACAAAACTGAAAAACTGGAGGAGTGCGCTAAACTTGAATGACGATGTGCCAGTGGCTCACAGCTTAGTCGCTATGGCAACAGCTTATGATTTTCTTTGGAATAATTTGGATGTAAGACAACGAGAACTTACAGGATTAAAGATAACTAAAGTGACTCAAATCTTATACAAAAGATCGTTTCATCAATGGTGGGGCCACGTTTATATTCAAAACCACATGGCAACCAACTATGTGGCGATGTTGACAGGCGCACTAGTAGTTGGGAGGCTCCATAAAGAGGCTGGATTGTGGACGCAAAGAGCTCACAAAATGCTAAACAGGACAATGTTTCTACTTGGGTTTGTTAAAGATGGCTCACTGCAAGAGGGTGTTTCGTACGGTAGTTACACCACAAGATCTCTTACACAGTACATCTGTCTTGCAAAGAGGCATTTACATGTCGATCTCACAAACAATGCTTGGCTAAAAAAGCACTTTGAATTTATCTATCGAACTATTTTGCCATCATTTGATAAAACTGTAGGCATTGCTGACTCGAACGGTGCATGGTTTTATGGACCTGAGAGTCAGTTAGTCTTTTTGGATAGAACAGTTTTAAGGAATGGTTTGGGTAACTTGCTGGCTAAAAAAATATCACATTTGCGTAAAAATAATAAAACGCTTTCCCTAGCTCGGGCGCATCGTTACGCAACTCTATATACGGAATTTCTATTTTACGACAATAACATAGAGGAACAGCGTCAATCAGACCGTTGCACTCCTTCACTGCATGTCTTTGAAGACTGGGGAGTGGCAATCTATGGGCGCAGTGCTAAACCAAATATAATGAACGATTTTACAGCTCCTACTCAGATTGCGGGTACCGTTGTTAAAAGCTACAGAGAAGATAAACTAAAACAGAAATCTACAAACCAACACACGTGCTCCCACGCGAACAGTGGCATTCAGTCAATGACTTTCGTTTCATTTAAATGCGGTGTCCTTCACGGTAAAGCCATCAACCATATTGTCAATACCAGACCCTGGTCATGGATTAAGGGCTGGAAAAGTTTCAATCCTGGTCATGAGCATCCAGATCATGGTTCGTTCACCTTCTATCCAAATGGTGTACCGTTTATCACAGAGGCACTTTATGGTCCTAAGCACACGTGGCTAAACAACGCCTTAATGTTTGGAACATCTTCGAATAGATCTGATAGTTCGTTTGGCCAGCTAAACGAAGGTAGTAAGTGGTTGAATTTCAAAGATGACAAATACTGGCAAGCTAGGGGAAATATTGTTGCTGCTATTCAAGATGGTGATCATATTTACTTAGCTGGCGAGTACTCACAATGGTATCCTAAGACTTTAGGTTTGGAACGACTTTATCGAACTATTATATTACTAAAACAAGATATTCTTGTAGTATGTGACGTCGTTATAAAAAATTCAAAAGGCAAAGCAAGCAAAATGTCTGCTTTCTTTCACAACAGGTTCACAAAATTTAAAATTCAACACGACGACGAAGGTGAAAAGTTTGCAGAAATCGTGTACAATGACGTGTCGTACCGGGTACAGTGGGTCAACTCCTTTGGCTCAATCATCGACGTACAAAGTACAAACGCTGAATTTCATGCCGAGTACGGAAAGAGAACAACCAATTTTTTAAATGTCACTTCATCTCTCCATGATCGGATAACTCACATGCACACATCAGTCAAGCTTGCTCCAGTCAACTATCAGGAGCTTCACATGATGGAAACCAAAAACATAGCGCGATTCCTGGTTTCTTGCTTGTTCTCTGTGACTGTAATTCACCTGACGGAGTGCATGCCATCATCGCTACTGTCGGCACATCAGCACGCTATGGAATGGAGAGCTCAAGTTGATGAAGATTATCATGCAATCCCCTTACTAGGATGGGCACTCAATAAAGATCAAAAACTGCTCTCAAGTCATCGCACTTTAACAGCAAATAGCGATTACAACGCAGAAAACAGGCCAAGTTTTCGTGTGGTGTCGAAGAGGGGATTATTTGATATTAAGAATCCCATGGTGAATAATAAAAGAAAATCTCACCAGGTTGCGCGTATCTTTATGACTCCATCGGCAGAATGCCTGATTATAGACTCAAAGGGGACAGTTAGTGCATCCAAAAAACAAACCACTTGCGAATCATTTGGAAGATTTTGCCATAAAGTCAGCGGCAGTACACTACAACTTAAAAACATAAAAACTGGAAAGTATTTAGCAGTAAACAATAAAGGCCTTATTTATTCTACTGATGACGCCAAGTCTAAAGATACCATTCTCAGTGACGTCATCGCAAACCATAATAATTTCTCGATATATATTTACAAAGAAATCAGCCAGAAGAAATGTTACATTGACGCAACATCGAATGCTCTCTTCCAGCGATGTTCTTTCGCTGCTACTCCACTAAAGCCTCAATTACGCGGAATTTGCACATAA

Transcript

gene09293.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IZU8	Dermatan-sulfate epimerase-like protein OS=Homo sapiens OX=9606 GN=DSEL PE=1 SV=2
Q0VBN2	Dermatan-sulfate epimerase-like protein OS=Mus musculus OX=10090 GN=Dsel PE=2 SV=1
P0C2H4	Dermatan-sulfate epimerase OS=Bos taurus OX=9913 GN=DSE PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002542 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16332 all species →	DUF4962	Domain of unknown function (DUF4962)	Repeat	Interproscan
PF00167 all species →	FGF	Fibroblast growth factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008996 all species →	Homologous_superfamily	Cytokine IL1/FGF	Interproscan
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR052447 all species →	Family	Dermatan-Sulfate Isomerase	Interproscan
IPR032518 all species →	Domain	Heparinase II, N-terminal	Interproscan
IPR002209 all species →	Family	Fibroblast growth factor family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15532 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030204 all species →	Biological Process	chondroitin sulfate metabolic process	Interproscan
GO:0030205 all species →	Biological Process	dermatan sulfate metabolic process	Interproscan
GO:0047757 all species →	Molecular Function	chondroitin-glucuronate 5-epimerase activity	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene09293.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.