Gene detail

Detailed information of gene09302.t1 in Actinoscyphia liui

Genomic Location: chr3:2085740...2108404
NR annotation: XP_031573985.1, uncharacterized protein LOC116307805 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene09302.t1

ATGGCAATCCTTCAAAGTATTGCAGTTCAGGTCGCCAAGAACTATAATAGGCTTGCCCAATGTGAGAGCTTGAATGTACTAGCTCCATCGCTTCCTCCATTGAACGTGACCGGTTTCAACTCAAGCTCAACGTCTATCTTGATTAACTGGGCTGAAATCCCTAACCAAGATCAGAATGGCATAATTCGTCAATTGTGTATCGTTGTTTTTGAGGTAGCTTCAGGAAACTCGAGTGCTGTTACATTAGTCATTCAAGTCTCAGGCGCACCAGCACGTAGACGTCGACGAGCAATCTCCTTCGATCCCAAAACCAAAACTTTAATTGGTTTGAAGAAGTTTACAACGTACGCTATTCAAGTTTATGGTGTCACTATTGCTGCAGGTCCAATGAGTCCTGTCATTTATATCACTACTGCTGAAGATCTGCCATCCGCTCCAGTAACAAATCTTACCGTTACAAACTCGAGCTCCTCAAGTTTATTTTTAACGTGGTCTAACGTGCCTGAAGCCAATAGACACGGCATTATCCGATACTTTGTGGTGTTCTATTGGAAGGCTGACTGGCCGATAGTTGTGATGAAGAACGTAACACTACCTATAGACAGTGTTCGAGTCACTCCACCAAATTCCAACTCAACTGAATTCAAGTTCAATATGACAGGACTAAAGATATGGACTAACTACACCATTCAAGTGGCTGGCTTTACTGTTGGTGTTGGAGTACGTACTAACGAAACCACGGTGTCCACAGATGAAGATAAGCCGTGTCTTCCACCCCATTACGTGTCTTTTGACATCCCAAAGTATGCCGCTCTTGAAGTGTTATGGTCAGAGGTGCTACGTCATTGTAGAAATGGTATTATGCGAGGATACCGACTGATTTATCAAGAACTAGTTCCAGGCTCAACTCCTTTTATAGTAAACTTTACAGCGTCACAGCATCATTACGTTATTGAAAATATGAATATGGAAGCCAACTACAGCGTACGGGTTTTAGCATTCACCAGAAAAGGTGATGGGAATGCCACCTTTGACCTTGCACGACCAGACAAATTAGGTCCAAAAAGCAGTCCTATCAACGTGACAGCGTACAACTTTACCACACCAAATGCCGTTACCATTGAATGGAAACCAATAAGAGACCCTCTTGTTCTTCTGAAATTGTTGGGGTATAAGGTAGCCTGGAGGGTTCTCTCAGAAGGAGGCGAAGAGATAGAAGATGCACCATGGAAAAGATACACAGTTCGAAAAGACACTTTGACAACCACTATTCAAGGGCTTAAGAATTTTGACCGCTACCAGATCGAAATATCGGGCTTTACTCGTGGTGGGTTTGGGCCATCTGGTATAACCTTTGGAGAAACATGTCGCTGTTCCAAGAGGATTACTACAAATTACCGCATCTTTTCACCCTACAACAGCGTGCAAATCTCTCCTGATCTTAAGAAAGTGAACATGTCAGGAATGATTCCCAAGATATTAAACGATTTAACAGTGGAGTGCTGTCAAACGTGTAAAGCACATGGAAAATCCTACGTCGATTTTGTTGAGAACGGGAAAAATATGTCAGCTTTTCAACATAATGAAAAAGACGTCATCGATCTGATAGATGACAGCAATGACCTCAGCTTCCCAGTGTATGGTTGGAAGTGGCAGGTCCGATACCAGGGAATCTATCGCTATATACCGTTGGTCGAATCTCCAGGATTCGCTTTCCTTCTTTTAGAGCCAGATACAGAAAGTCCTTTAAAAGCTATTTTAAAGTCTATCTTTGACACATGGCCATATTTACTGATATGTGTCATCATGGCACTCATTGCGGGAATTATTGTATGGTTTATGGATACAGCTTACAACGAAGAACAATTTCCTCATTCCTACTTTAAAGGAAGCGGTAATGGCTGGTGGTGGGCATTTATCTCCATGACAACGCTAGGATACGGCGACAAGGTTCCTGCAGCCAATCACAGCAAAGCATTTGCAGTTATCTGGGTTCTTATTGGTCTTGTTGTTTACGGAATTTTAAGTGGTTCAATTTGTTCAGCCTTTACAATTGTAATCTATCAGTCCAGCACAAGGCTGTATGGAGCTAAGGTTGCTGCTATTCACGATACTCCCGAATATAGATTTGGAGTCCGTCGGAGTGCAAGGGTGAACACAGAAGCAAACTATTCAAGTTTTGAAGAGGTTCTTGAAGCTTTGTTAGACAGAAAAGTAGACGGGATGCTGATGGACGCCTTTGAAGCAGGCACAAAGAGAATACAATTTGCGAAATCTGGTAAAAAAGTGTTCATCCACAAAGTTTATGATTTTGCATCTACTTTTGGAGTTGTGATAGCAGGCCCGTCGACCAGACTTTATCAGTGTTCGCGTGACTGGATGTCAGCCAATCGTGCAGAAATGATAACCCACATCGCTAAGTACATTGAAGTAGTAGAGTGTGAGGTGGAAGCACACATATGTGCCTCATTCATGGAGATGCTAAACATGAACAATACAGATGATTTACCTGACCTTGCTATACCTAATCCAGAAGTTCGAAAGGAATTAAGAAGAACATGGTTTCTAAACTTATGCTTAAAGTATGTTGAGAAGTACTTGGGAGGCAGTGAAATGCTGACACTTGTAAATCTAGTTGGAGAAGTGCATGCAGAGCAGCAAACAAAATCATTTTGA

Transcript

gene09302.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6V4S5	Protein sidekick-2 OS=Mus musculus OX=10090 GN=Sdk2 PE=1 SV=1
Q58EX2	Protein sidekick-2 OS=Homo sapiens OX=9606 GN=SDK2 PE=1 SV=3
Q8AV58	Protein sidekick-1 OS=Gallus gallus OX=9031 GN=SDK1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000017 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050379 all species →	Family	Type I Cytokine Receptor	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004896 all species →	Molecular Function	cytokine receptor activity	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0019221 all species →	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019955 all species →	Molecular Function	cytokine binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene09302.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.