Gene detail

Detailed information of gene09510.t2 in Actinoscyphia liui

Genomic Location: chr3:5437255...5456049
NR annotation: XP_020901420.1, probable low-specificity L-threonine aldolase 1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene09510.t2

ATGCGCTCGAGACTCGAGCACATAAATTGGAGCATCGCTCCCAGCAAAGTTCGATTCATTCGAGAAGCTAAAAGCACATTTAAAATACAACAAGAAGAAGAAGACGAAAAAATGGCTGAAGTAAATGCTCAGACTGAAGTCAATAACCAAGAGGCTGGCAACCAGCACGAGACGCCGCAAGACGGCCCCTCTAGTATTCAAGTCAATAACCAAGAGGCTGGCAACCAGCACGAGACGCCGCAAGACGGCCCCTCTAGTACTCAAGTCAATAACCAAGAGGCTGGCAACCAGCACGAGACGCCGCAAGACGGCCCCTCTAGTACTCAAGTCAATAACCAAGAGGCTGGCAACCAGCACGAGACGCCGCAAGACGGCCCCTCTAGTACTCAAGTCAATAACCAAGAGGCTGGCAACCAGCACGAGACGCCGCAAGACGGCCCCTCTAGTACTCAAGTCAATAACCAAGAGGCTGGCAACCAGCACGAGACGCCGCAAGACGGCCCCTCTAGTGCATCTGTTATCTTCATCGACATGGAGTTTTTTACTCAGACTGCATCTATTAATGTAATACGTATTCCATTGGAAAATAACATTAATATGGAAATGGTACTGTGTCCTATCGATCTGCTACACTCACAACCACTTACGATTGGAAGTATTTATCGCCCACCTCAACAAGACGATTTCTACGCTAACTTTATCGACTATTTGAATAATCTTGATTTGACAAATAGAGAAATATATTTGCTCGGTGACTTTAACTGTAAGGGTACCTCTTCTCCTGAAAGACAATTTTTATCATCAATGACTGATCTAGGATTACACCAATTGATCAAAGAACCAACAAGGGTTACAAAAACGTCATCATCTACTATTGATATGATATTCACAAACTCATTACATCGCACAACAACCTCTGGAGTTCTGAAATTGTCTCTCAGTGACCACTATATGGTCTATTGCAATCGATCATGCAAAATACAGCGAGGTAAACCAAAGATCATTAATGTGAGAAGTTTTAAAAACTTTGACTCGACAGCATTTCTTACAGACCTCAGAAATTCACCATGGAATACAGTCTACATGTTTGATTCACCTGACGATGTTTGGTTCGCTATGGAAAAATTCCTACGGGACGCTTGTGATAAACATGCTCCTCTGCGTTCTATGCGGATTAGAGGTTCTCACCCACCTTGGATGACAAACGAAATTATCCAAACAATCAAATCACGTAATACTGCAAAACGTATAGCTACCAGATCCAAACAAGACCAGGACTGGAATGTTTATAAACAACTAAGAAACAATGTAACTAGACATATTGAGTTAGCAAAACGCGAGTATTACAATAGCCTTCTATCTGAGAATTCAAAAGATCCTTCTAAAATCTGGGATACATTGAAAAAGTTACTACCAAGCAAAAAGAAAAGAAGCATCAACACCATCTGCACTGGAAATTGTACCTATACTGACAGCAAGGACATAGCAAATGAATTAAACAAGTTCTTTACAACGGTTGCTGACCGATTTAGTACCAATCCTCAGGAACAACCCTCAACAACGAACAATGATAATGAATCATCAAATGATTTCAAATTCCAAGAAATATCATCAGAGACTGGTTATACTGCACACAGGATAGCAAGACTGTTCTCCATGTACACCAGTGGTATTAAAGACAGTATGGACCACAAACATGGCGTTCACGTGATCGATGTACGAAGTGATACTGTTACTAAACCTATCAACGACATGAGACAAGCAATGGCCAATGCAGAGGTTGGCGATGACGTGTTTGGCGAAGACCCTACAGTTAACGATCTTCAAATTAAAGCTGCTAAGTTACTTGGTAAAGAGGCTGGTCTGTTTGTCCCATCAGGATCAATGGGAAACCTTATTTCTATTATGGTGCACTGTCCTCACCGTGGAGATGAAATACTAGCTGGTGATCGGTCACATATCGTTGTATGGGAACAAGGTTCTTGTGCACAGTTGGCTGGAATACATTCCAAACAGGTGCGCACATGTCCAGACGGAACATTAGATCTAGAGGACTTGCAAGATAAAGTCCATGATGGTCTTGATGCCCACTTAACACATTCTAAAGTGATTTGTTTAGAACAAACCCACAATGATACAGGAGGCTGTGTATTACCACTTTCCTATCTTGATAAGGTGAAAGAGTTAGCCATAGCAAACAATCTTGCTCTTCACATGGACGGTGCACGGTTATTCAATGCTGTTGCAGCCCTCAATGTCCCTGCCTCACAGATAGTTCAACACATGGACTCAGTGACATTTTGTCTGTCAAAGGGGTTGGGTGCTCCTATTGGCTCTGTTATTGTGGGCTCTAAACAATTCATTGAAAAGTGTCATCGGCATAGGAAGGCCCTGGGAGGTGGTATGAGACAAGCGGGTATAGTAGCAGCAGCTGGTATCTATGCCCTTGATCACATCGCACCCAAGATTGTTAACGACCATAACAATGCCCAGAGGCTTGCTGAAGCTATTGATCACATCGCACCCAAGATTGTTAACGACCATAACAATGCCCAGAGGCTTGCTGAAGGGCTACGTAGTCTGCCAGGCATTGAACTAGTTCCCAAGGTCATCCAATCCAACATGGCATTCTTTAATGTTGTCACGGATAAACTCACAGCTGATGACATTGTACAAGGAATGGCAACAAGTACAGATGAAGATCCAGTGGTTGTTAAACTACTTGCAATGTCTCCTACTAGAATACGAATTGTTTTCCACCATCAGGTAGCTAGTAGCGATGTAGACAAGATTCTTCACAACTTGGAAAACATCTTACAAATACATCAATGA

Transcript

gene09510.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8RXU4	Low-specificity L-threonine aldolase 1 OS=Arabidopsis thaliana OX=3702 GN=THA1 PE=1 SV=1
Q9FPH3	Probable low-specificity L-threonine aldolase 2 OS=Arabidopsis thaliana OX=3702 GN=THA2 PE=1 SV=1
Q21890	Uncharacterized protein R102.4 OS=Caenorhabditis elegans OX=6239 GN=R102.4 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003569 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01212 all species →	Beta_elim_lyase	Beta-eliminating lyase	Domain	Interproscan
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023603 all species →	Family	Low specificity L-threonine aldolase-like	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR001597 all species →	Domain	Aromatic amino acid beta-eliminating lyase/threonine aldolase	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48097 all species →	L-THREONINE ALDOLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006545 all species →	Biological Process	glycine biosynthetic process	Interproscan
GO:0006567 all species →	Biological Process	threonine catabolic process	Interproscan
GO:0008732 all species →	Molecular Function	L-allo-threonine aldolase activity	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene09510.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.