Gene detail

Detailed information of gene09571.t1 in Actinoscyphia liui

Genomic Location: chr3:6609825...6632702
NR annotation: XP_020900502.1, RING finger protein unkempt homolog [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene09571.t1

Transcript

gene09571.t1

ATGTCGTCGTCGGAGGCTGTAATGACTTCCAGTACAGCCTCTGGTTCGACAGAAAGTAGATTAGCTGCATCTCTCCAACCTCAGCCGGAGAAACCTTTCCACTATACGTACTTGAAGGAGTTTCGAGTGGAGCAGTGTCCTCTTTTCCTCCAGCACAAATGTACAGCTCACAGACCTTTCACTTGTTTTCATTGGCATTTCATGAATCAAAGAAGAAGAAGGCCAAAGAAAAAAAGAGATGGAACGTTTAATTATAGTCCTGATGTTTACTGTACTCAATATGACGAAACGACTGGCATCTGCCCTTCGGGAGACGACTGTCCATATTTACATCGAGTTGCTGGCGATGTTGAACGTCGCTACCATCTTCGCTACTACAAAACTGCAACCTGTGTGTACGAGACTGATTCCAGGGGATATTGTGTGAAGAATGGACCTCACTGTGCCTTCGCTCACGGACCACACGATCTCAGACAGCCGGTCTATGATGTTAGAGAACTTCAAGCTATGGAAAAAGAGGACGTAGATGGACAGCAAGGTGGTGAAAATAAAGCAGTGATCGAAGATCCACGGTGGCAAGATACCAACTTTGTACTGTCTAATTATAAAACTGAGCAGTGTAAAAAACCTCCTCGCCTGTGTCGTCAGGGTTATGCCTGCCCATATTATCATAATACAAGAGATCGAAGGCGGAGTCCCAGAAAATACAGATACAGATCTACACCTTGTCCCCATGTCAAGCACAGTGATGAGTGGGGAGAACCATCAAGTTGTGAAAGTGGAGATAACTGTCCTTATTGCCATACCAGGACAGAACAACAATTTCATCCTGAGATCTATAAGTCTACCAAATGTAATGATATGCAGCAAACTGGTTACTGCCCCAGAGGTCCATTCTGTGCCTTTGCTCATGTTGATCATGAATCTGCTGTCAGTCGAGAGGTTACTGAAGATGAATTTAATATGTCTTTGCATTTAGGAATGTCATCAGGTTTCTCACTAGATGGCTCTATTACAAGTAGCCTACCTCAACCAGTAGTTAAACCCTCCCGTTCATTGTCTACATCTTCTGTGGGTTCTGGAAGTCTAGGTGACCCTTTAACTCCTGGAGGCTCATATCCTAAGGCACCAGGTTCTGAAAGGTCTGAGAGAAGTAGCAGTCGAGAGGAAGACCATCAGGCTGCTATAAGGAGGCAGATATTATCAATAGAAAATGATCCCCATTTAGATGAAGTAGAGAAAGCAAGAAGAAAGCAGAGTTTTATTACATCAAGAGCATCCTTGTCGTCGTCGTCAGGATCAGCACCACCAACACCTTCTAGTGTTTCAGCTTCAGCTCCACCATTCTATCCAGCAGCAGACACAGTTGAATCAGTGGTAGAGAGTGCACTTGATGACCTTAACCTGGATGACTTTGATGTCACAGAATTAGAAAAAGAGTTAAACCATGCCTCTCCTGGTTCCATGTCCCTTGGGGAGTCATTAACCTCATTATCCATAACCACTATTGGATCAGCACCTGTAAGTATTCCAGGCTCCTGCTCTCCACAGTCATTTACTCCACAGTCACCAACATCTCCTCTAGGACAATATTCTTCTTCATATGGATCTGCTGCTTCACAAAAGCAAAGCAATCCTTACAGAGTTAGTCCTCTTATACGCAGTGGTCTTCCTAGCTCAATATTTGAACCTCTCACCACCCAACTACATTCACCTAAGCAGCTTAGCTCTTCTCAACTGCCATCTCCTTTGGACATTGGTGCTGGTGCTGGGGAGGTACACAGACTCAGTGAAGAACTTATATCTGCAAGAACAAAACTAGCATCATGGGAGGACTGCTGGGTGCAAGCCAAGCAAGCTTGTGATGCCTGGAAAAAAGAAGCTGAAGAATCCATGAAAAAAGCCAAAAGCTCTCATCAAGATAAACTAGAAGCACTTTTGAAATTAACTGAGGCTGAGAAAGAAATTGTAGCTCTAAAGAACAAAATAGAATGTTTACAAAGTGATCCTGAAATCCATGTCCTAACCAAGATATCAGAATTAGGTGATATGTCCATTCCCAAATTAACAGAACTTCATAATCGTCTAAGTAGTGATTTGCAAGATTTAAGCAAGGTTATGTATGTTAAACAGTCCTTACTGTGTAGCGAGTGTCAGGAATCTAGAAGAAATATTGTAACACTACCATGTTCACATTGTGTGTTGTGTGAGGCTTGTGTTTCCACTGTATCAGAGTGCCCAACCTGTCATATACAGATAGCACAACGAATCACAGCCATCATTCCATGACTGGGTCATGATTGACTGGTGATCAACTTAGGATTTTGGTCTCTTTAAAATTAAACAGTGTAAATAGCATACTAACATTTCTACTTAATTTATACAAACGGTTGCTTTTAGGCATCTTGAAAGGAATTTTTCTAGCTACTTTTGCCTTTTGCTAGAAAGTGAGAGAGTTTGTAATTTTGAGCGTGGATATGAATGGTCATTCAGACGTCTCAGTGATGACAATACAGTACAATAGTTGAAATGAGGGAGAACTGCATGGAGTACACAGGTCTTTGTTTATGCTATAGTAGAGACATTTTACAATTACTATTACTTTCAAGATGGCTAACCAACTGTGATGTGGTAGTCAACTGCGTATACAATTAGTGCTTTTTTCTTAGAATTTTATTGGTGTATTGTGTCATTACCCTTGGTTTAAATAGATGTTCTTTCACTTTGTCCCTACTGATCCCTATCACAGGGAAACTTTATAAAATCCACAAATGTTTTAAATGTCACATTCCTATTTGGAATCAATGGGAATAATTCGTTTTTCCCATTGATTCCAAAACCATCAATGGGAATAGTTCGGTTTTCTATTGATTTACAAATGGGAATAAGACAAAAACCATTCATGGATTTTATAAAAACAATTCCCTGTGTATATCTTACTTAGTGGAGATGAATATAAAGAATGTCTATTTTGTCAGACAGGTGCATTCACTTTTAATCATATGTAGGTATCACTAGATCAATCTCCTGACTGACTAATGGCAACAATGGCTCAACAAACTGTATGTTATGTTTCTGCTTACTTTATATAATCTGACATATAGTCAGTTATTTTTTACACACTCAACTCTGCCAGGGGAATTAGTGCTTATCAGTATCATGATTCTCTTGAAATTCTTATCCAGAACTACTAAGCTAGCAATATGACATAGTATTGCATGGCTCTAGAAAACTGTTTGGAATTTGATAGAAATTCAATCAATTCTGATTCAAACAAGAAAATGTGTCACTACTTTTCATAGCTGTTATAAGATAATTAATTATACATAACAAAATACTGAAATAGTGTTTGTACACACTTTATGATGTCATATGATCTTGTGATAAATTTTGATAATTTTGAGCATTTAGTATTTTTTGCTGAATTCTGGGAGGATTGTGATACAAACTTTATATATTGCAACTATGGTTGAATACCAACCAATACAACTTCCTAATGGCAGGTACGTCATTATCTCAATAACTTAATTATATTTTAGCAAAAAAAAGCAATGAGAGCTAGAACAGAAAGTGTACTTATAATTAGGAAAGTTTATAATTTTGAAATTTTAGTCATTTTTATGAGGAAATGTTAGGTTTTTCTTGTAATTGTTTTGTTTACTGAGTAGACAGACTGGTGCATAAAGCAAGTGTTCTTTATGTGTGATGGGTACGTACTGACTAGTTTGTTCAACCTCCCTTAGGTGTTTTAATTGTATATGACCCACCTTAATATTATTCCTATTTAATAAGATTGTTGCCAGCCCTTTACTTGATAAAGAACACTGTCTTGGTCCAATGTTTGCTCTGTTTCTTTGTAAAGAGACCTGTATTGTTATGTATTTCTTCAAATGAAGTATTCTAGGTGTTATTATTATATTAGTGCTTCTCTAGGGAACAAAAGGTTTTTTAGGATTTGCTCCCTAGAAAAGCAAGTTAGTATACAAATCTAGATTTTAAGGTATAATTATTAATACTATTGTATTATTCAAGGACATTTCTTAGGATTTTCCAATGTTGGCATTGTCCCGGGAAGTTTAAAAATTTATTATTTGCCACAATTAATTATTGTTACCCTTGGAGTTGGTAGCTGTTTGGTGCTGGATGTACATGATGCCCAGTGTATTTATCAGCACTTCTTAGCAAAGAATTATAAAAAATAAATTACCTTTAACTACTTTTATGCATGAGTTTCTTATTAATTTTAGTATATACCTCATTGAATGATCATTGTGGGGTTGAGATCCATGTAAACTGAGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BL48	RING finger protein unkempt homolog OS=Mus musculus OX=10090 GN=Unk PE=1 SV=1
Q9C0B0	RING finger protein unkempt homolog OS=Homo sapiens OX=9606 GN=UNK PE=1 SV=2
Q6EE22	RING finger protein unkempt homolog OS=Canis lupus familiaris OX=9615 GN=UNK PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005340 (this species only)
Transcription factor family	zf-CCCH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18384 all species →	zf_CCCH_5	Unkempt Zinc finger domain 1 (Znf1)	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR040594 all species →	Domain	Unkempt, zinc finger domain 1	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR045234 all species →	Family	RING finger protein Unkempt-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14493 all species →	UNKEMPT FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene09571.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.