Gene detail

Detailed information of gene09792.t1 in Actinoscyphia liui

Genomic Location: chr3:10343212...10385430
NR annotation: KXJ15123.1, Neogenin [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene09792.t1

ATGTTCCTTTCTCTTGGTCAACTTATTACGTGTGTTTTCGTTACAGGGACAGTTTTTCTTAGCGTTGAAGGTGATTCCATTGAACTTGCCCCATATTTTACACAAGAGCCATCAGATATTATAGCTCAAAAGAATCATCCTTTAATCTTAAATTGTGCTGTAAAAGGAAACCCTAAGCCAACTGTTAAATGGAATCGTAATGGTGCAGAGTTAGTGCTTGCTGGAGATGATAGAAGGTCAATACTCCCAAATGGCACACTGTATTTTAAAACTATTGTACACACCAAAAGCAGTCGACCTGATGAGGGTCATTATCAGTGTGTTGCAAGCTCCCAAATTAGAAGTCAAGATTATAAAGTGGTCAGCAGAACTGCTAGAATTCAAGTTGCTGGTTTATCATCCAAAGTTCTTATAGAACCACCAACATTAAGAGTGCATTATGGTGATCTAGCAAGAATAGCATGTAAAGTGCGACATTCAATACCTAAAGCACTAATTACATGGAAACACAAGCACAAAGATGGAACCATTATCACAATAGTACCAAGTAAACGGCATGCATTTATTGATAATGGAGTGTTACAAATCAGTAATATGAAGTCAAGTGATGCAGGAGAGTACATGTGTACTGCAACCAACAAACTAGCAGGAAGGACACACTCTAGTAGTTATATGACACTAAGTGTGGAACCAGATAAAGGGCTCTTGAGAAGACCAGACTTCATAGCAACCCCTGTGGATACTAATACTACAAAGGGGGGTAGGGTAATACTTGAATGTGCTGCCTCAGGTGCACCAAAGCCTACTGTGCAGTGGTTCCTGGACTCAACACTAATATCGTATGACAATAGAGTACGTCTCCATGGTGAAAGCAATTTGGAAATCACCCAAGTGACATCAAGTGACGAGGGAGTCTATACTTGTAAAATTTCTGTGAATCGTTTTACTAAGTCTGAAAAAGCAAAACTACATGTTCACTATCCACCAATCTTTCAAACTAAACCTACAGACGTGAATGCGCATACCAATGATGATATTCAGTTTGATTGCACTGCAAGTGGCAGCCCTGCTCCCACAATGACATGGCTCAGGAATGGCTTTCCACTCGGAGCATCAGATTATGTCATTATAACTAAAACTGCTATTAAAGTCTTGTACATAATGTCGTCAGATACAGGCATGTATCAATGTGTGGCAGTGAATTACTTGGCTGAAATACAAGCTGCTGCAGAGCTATCTGTATTTGAAAAAAATATTCCACTCCCAAATCAAAAAACAACTGTCCAACCATCAACAACAGGAGCAACTACAACATTGCTTCCTACCACAACAAAGAAGCCAACTACAAGTCATCCCACCACAACTCAGCCCACTACACCTAAACGTACCACTACTAAACCCAGTACCTCCAAACCTGCCACTATTGTCACTGCACCAGTATCTGTGTATCCTGGACCTCCAGAAAATGTTGCAGTACGAACCAAATCTGAGACTGAACTTGAGTTAACATGGGACACTCCAAAGGGAACTGTTGACATGATACTGGCTTATAGCATTATCTATAATGACAAGATTGATAGTCCTGCTATTTTAGGCCTTGAAGTTGTGGCTGGTCATATCTATAAAAAAGTCATCAAGAATCTGAAAATAGACACTCAGTATTCCTTCCAAATATTTGCAAGGAACCGTCATGGTTCTGGTGAACTGTCTAAGCCTGTGTATGGTTGGACCGCCTCCAAAGGCCGTCCTGGAATACCATTGTCTTTGGCAGCAATAGGGATATCGTCATCACAGATAAAGGTTCAGTGGGCAGAACCCACCACAGGGATTTCTGTTAAAGAGTACATACTAGAATACAAAGAAGTAGGTACTGTGAATGCTACCATGTATTCTGTGTCAAAACGCAAGCACAAAACCCTCAAGAACCTGAACACATACACACAGTATGAAATATTGGTGTATTCTGTTAGTAAAGCAGACAAACGAAGCCATCCAGCAACCACTAAGGCTATAACCTTTGGAGGAGTGCCTAAAGGCAAGCCAACAGATGTGAGTGTTCGTGCTGATGGGTCGAGTACAGCGTTGATAGTCACGTGGAAGCCTCCTTTCTATGACATCGTTAATGCAAAGATCACCAAGTACTTGGTAGAATACTCAATACCAGACCAAAAACCAACTGCAGTCGAAGTAGAGGGTGACGTGTTAAAGCACAAGCTAAAGAATCTCCTTCAGAACAGTGTATACAAAGTTCGTGTTGCTGCAGGAACATCTTCGGGGTTAGGTGACTTCTCACAATGGGTTCGTTCCAATACTAGTGTTACAAAATGCTCAGAATCTCATCCTCCAGGCTTACCCACAGAGATGGATGTGTCCATTCCAAGTAAGGGCACAGAAATGATCAAGGTTGAGTGGCAGCCACCCATTGATGCTAGTCAATGGTGTGTGACTAGCTATGCCTTGGAGTATGGTGAAGGGACTCCATTCGTTAACAAAGTTACCCTCAATGCTTCGTCTAGAAGTTATCTTATAAGAACAGGAATAAGTTCAGGAAAAGAGTACGTCATCAAGCTAGTAGCCGTGAATAGTCGAAACAACAATGGTCCCAATGTACAGAAAGCTATTAAAATTCCACCCAATATCCATGCTCCAAGAAAACCAGTCAAACAGGTTCGTGCAACTCCACTGTCATCCCGTGCTGTCCGAGTGACCTGGATCGAGTCTGGGCAATCGCCCAATCTTTATCATGTGTTGCACACGTTGACAAACACCGTGGTGTATTGTGGGAATACTACAAAGAATTTGATAGTCTGTGGTGGACTGGAACCTTACACTTATTACACGTTTATTGTTAAAAGAAACGACGAGGAGAATGGTGGAACTGCGACGAACAGAACCATGGAAGACAAGCCTAGTCCACCACTGGATATCACGGGACGACTAGCAGAGGATAACAGCAGTGACCTTTATCTTAACTGGCAAATACCAGAAAAAGTGAATGGAAAAATTCTACAGTATCGTATCTTTTACTCGACCAATCATAGCATTCCTATCGAGATGTGGAAAAGGCAGGAAAGTAAAGGCAATACAATGAATGCACGGATAAAAAATATCCAAAAGGGGAAAACGTATTATTTCAAGATACAAGTACAAAACGGTGCAGCATGGAGTGATCTATCCAAGACTAAGATGATATCAACTGATAGCACTGGTGGACCTAAAGATAAAGACGACAAACCTAAAGGCAATGTCGGTGCCCAGGCTGGTGGTGGTGGTCTTAAAGACAAAACCCTGTGGATAGTCATAGCTGCAGTAGCCGGGGTCACTCTCATTGCTATCATTATCATCAGTGTAGTTTTATGTAAGAAACGTTCTGGCGACGACTCAAGTCCCAGAAAACCGCCGCCATCCTACAAAGCAGCTGTCATGGCGAATGGATCGGTGAAGAAGAAGAACAGAGAGGATAAACCACCAGACTTGTGGATCAACCACTCACAGAACATGGAATTAAAGTCGCTTTACCAGGCTAATCCACCGCCTGATGTGACCAATATACCAAGGAGTTCCACCGAGATGAAACCCCTAGATGACCACCCGATTGACAAAATCAAACTAGACCACGAGAAATGTTCCTTCCGTAAAAACAGTGAAGACCTTGAAGATGACTTACCTCCACCCCCACCGCAATTATTAGACCACGACGATGATGACGACGCGCCTTCACCTATTGCTATACCTGGGTATACTCCTTATCGTCCCATTGTCAGCTATCCACGCAATGTCGCCCCAGATGATGGTACGACCCAGTTATCGTATCCAGACTATCCCCTGACCAGCACCCCTCGGCACGCTAATGCTATACCACACAGTGAATCGTTTGACAACACAAGAGAACCCAACCACACTACCCCACTACTGCGATCACAGTCCGATGACTTCGACCACACCCCTTCACGACAAGCCCCTATACCCATATATGCTGTGCCCAAACCCAAAAACAAATCTAGACCGCCCAATGATGAACCAAGATATAAGGCACCACCGCTCACCCTGCCGAAGCCTGGTGTTGCAGACGATATCAATCTACCCCCAGTAGGGTACAGCATACCAAATGGTGTTGGTGTACCATCAGATCAGTGTGACGCCTATCCAAGACTGCGAACGAATGCAGATACGGGTTCAAATTCTGCTATTTTCTACGGAGACTCTGAGCAAAGTTCCGGTTCAGAGGAGGAAGTGCAGCATACGCCAATGTAG

Transcript

gene09792.t1

GCATGCAACAAAACTATTAATGTCAGAAAAAAAAACTCAGAAATTACAGTAAAAAACAAACAATTAATCTTAGAAAATATAAAAATTTATTTAAAAAAATTGTACTTTCGAGAAAAATTCTACTGGAGCCTCTGGAGCCCCGGGGGTGAGAAATATCCCGTTCTGATTGGTTGTTGGCTATTGATTGACATGTGACGTTGGTCCATAACATACATCTTGCCAAGCATTGATTTACGAAGCATGTACAGTAGGTCTGGTTGTGGTTGTGGTTGGGGATTCACACTGTTTTTTCCTACTTGGACTTCAAATTACTCTTCCAAACTTGGCTACGAAACAGAGTAAAGATGTTCCTTTCTCTTGGTCAACTTATTACGTGTGTTTTCGTTACAGGGACAGTTTTTCTTAGCGTTGAAGGTGATTCCATTGAACTTGCCCCATATTTTACACAAGAGCCATCAGATATTATAGCTCAAAAGAATCATCCTTTAATCTTAAATTGTGCTGTAAAAGGAAACCCTAAGCCAACTGTTAAATGGAATCGTAATGGTGCAGAGTTAGTGCTTGCTGGAGATGATAGAAGGTCAATACTCCCAAATGGCACACTGTATTTTAAAACTATTGTACACACCAAAAGCAGTCGACCTGATGAGGGTCATTATCAGTGTGTTGCAAGCTCCCAAATTAGAAGTCAAGATTATAAAGTGGTCAGCAGAACTGCTAGAATTCAAGTTGCTGGTTTATCATCCAAAGTTCTTATAGAACCACCAACATTAAGAGTGCATTATGGTGATCTAGCAAGAATAGCATGTAAAGTGCGACATTCAATACCTAAAGCACTAATTACATGGAAACACAAGCACAAAGATGGAACCATTATCACAATAGTACCAAGTAAACGGCATGCATTTATTGATAATGGAGTGTTACAAATCAGTAATATGAAGTCAAGTGATGCAGGAGAGTACATGTGTACTGCAACCAACAAACTAGCAGGAAGGACACACTCTAGTAGTTATATGACACTAAGTGTGGAACCAGATAAAGGGCTCTTGAGAAGACCAGACTTCATAGCAACCCCTGTGGATACTAATACTACAAAGGGGGGTAGGGTAATACTTGAATGTGCTGCCTCAGGTGCACCAAAGCCTACTGTGCAGTGGTTCCTGGACTCAACACTAATATCGTATGACAATAGAGTACGTCTCCATGGTGAAAGCAATTTGGAAATCACCCAAGTGACATCAAGTGACGAGGGAGTCTATACTTGTAAAATTTCTGTGAATCGTTTTACTAAGTCTGAAAAAGCAAAACTACATGTTCACTATCCACCAATCTTTCAAACTAAACCTACAGACGTGAATGCGCATACCAATGATGATATTCAGTTTGATTGCACTGCAAGTGGCAGCCCTGCTCCCACAATGACATGGCTCAGGAATGGCTTTCCACTCGGAGCATCAGATTATGTCATTATAACTAAAACTGCTATTAAAGTCTTGTACATAATGTCGTCAGATACAGGCATGTATCAATGTGTGGCAGTGAATTACTTGGCTGAAATACAAGCTGCTGCAGAGCTATCTGTATTTGAAAAAAATATTCCACTCCCAAATCAAAAAACAACTGTCCAACCATCAACAACAGGAGCAACTACAACATTGCTTCCTACCACAACAAAGAAGCCAACTACAAGTCATCCCACCACAACTCAGCCCACTACACCTAAACGTACCACTACTAAACCCAGTACCTCCAAACCTGCCACTATTGTCACTGCACCAGTATCTGTGTATCCTGGACCTCCAGAAAATGTTGCAGTACGAACCAAATCTGAGACTGAACTTGAGTTAACATGGGACACTCCAAAGGGAACTGTTGACATGATACTGGCTTATAGCATTATCTATAATGACAAGATTGATAGTCCTGCTATTTTAGGCCTTGAAGTTGTGGCTGGTCATATCTATAAAAAAGTCATCAAGAATCTGAAAATAGACACTCAGTATTCCTTCCAAATATTTGCAAGGAACCGTCATGGTTCTGGTGAACTGTCTAAGCCTGTGTATGGTTGGACCGCCTCCAAAGGCCGTCCTGGAATACCATTGTCTTTGGCAGCAATAGGGATATCGTCATCACAGATAAAGGTTCAGTGGGCAGAACCCACCACAGGGATTTCTGTTAAAGAGTACATACTAGAATACAAAGAAGTAGGTACTGTGAATGCTACCATGTATTCTGTGTCAAAACGCAAGCACAAAACCCTCAAGAACCTGAACACATACACACAGTATGAAATATTGGTGTATTCTGTTAGTAAAGCAGACAAACGAAGCCATCCAGCAACCACTAAGGCTATAACCTTTGGAGGAGTGCCTAAAGGCAAGCCAACAGATGTGAGTGTTCGTGCTGATGGGTCGAGTACAGCGTTGATAGTCACGTGGAAGCCTCCTTTCTATGACATCGTTAATGCAAAGATCACCAAGTACTTGGTAGAATACTCAATACCAGACCAAAAACCAACTGCAGTCGAAGTAGAGGGTGACGTGTTAAAGCACAAGCTAAAGAATCTCCTTCAGAACAGTGTATACAAAGTTCGTGTTGCTGCAGGAACATCTTCGGGGTTAGGTGACTTCTCACAATGGGTTCGTTCCAATACTAGTGTTACAAAATGCTCAGAATCTCATCCTCCAGGCTTACCCACAGAGATGGATGTGTCCATTCCAAGTAAGGGCACAGAAATGATCAAGGTTGAGTGGCAGCCACCCATTGATGCTAGTCAATGGTGTGTGACTAGCTATGCCTTGGAGTATGGTGAAGGGACTCCATTCGTTAACAAAGTTACCCTCAATGCTTCGTCTAGAAGTTATCTTATAAGAACAGGAATAAGTTCAGGAAAAGAGTACGTCATCAAGCTAGTAGCCGTGAATAGTCGAAACAACAATGGTCCCAATGTACAGAAAGCTATTAAAATTCCACCCAATATCCATGCTCCAAGAAAACCAGTCAAACAGGTTCGTGCAACTCCACTGTCATCCCGTGCTGTCCGAGTGACCTGGATCGAGTCTGGGCAATCGCCCAATCTTTATCATGTGTTGCACACGTTGACAAACACCGTGGTGTATTGTGGGAATACTACAAAGAATTTGATAGTCTGTGGTGGACTGGAACCTTACACTTATTACACGTTTATTGTTAAAAGAAACGACGAGGAGAATGGTGGAACTGCGACGAACAGAACCATGGAAGACAAGCCTAGTCCACCACTGGATATCACGGGACGACTAGCAGAGGATAACAGCAGTGACCTTTATCTTAACTGGCAAATACCAGAAAAAGTGAATGGAAAAATTCTACAGTATCGTATCTTTTACTCGACCAATCATAGCATTCCTATCGAGATGTGGAAAAGGCAGGAAAGTAAAGGCAATACAATGAATGCACGGATAAAAAATATCCAAAAGGGGAAAACGTATTATTTCAAGATACAAGTACAAAACGGTGCAGCATGGAGTGATCTATCCAAGACTAAGATGATATCAACTGATAGCACTGGTGGACCTAAAGATAAAGACGACAAACCTAAAGGCAATGTCGGTGCCCAGGCTGGTGGTGGTGGTCTTAAAGACAAAACCCTGTGGATAGTCATAGCTGCAGTAGCCGGGGTCACTCTCATTGCTATCATTATCATCAGTGTAGTTTTATGTAAGAAACGTTCTGGCGACGACTCAAGTCCCAGAAAACCGCCGCCATCCTACAAAGCAGCTGTCATGGCGAATGGATCGGTGAAGAAGAAGAACAGAGAGGATAAACCACCAGACTTGTGGATCAACCACTCACAGAACATGGAATTAAAGTCGCTTTACCAGGCTAATCCACCGCCTGATGTGACCAATATACCAAGGAGTTCCACCGAGATGAAACCCCTAGATGACCACCCGATTGACAAAATCAAACTAGACCACGAGAAATGTTCCTTCCGTAAAAACAGTGAAGACCTTGAAGATGACTTACCTCCACCCCCACCGCAATTATTAGACCACGACGATGATGACGACGCGCCTTCACCTATTGCTATACCTGGGTATACTCCTTATCGTCCCATTGTCAGCTATCCACGCAATGTCGCCCCAGATGATGGTACGACCCAGTTATCGTATCCAGACTATCCCCTGACCAGCACCCCTCGGCACGCTAATGCTATACCACACAGTGAATCGTTTGACAACACAAGAGAACCCAACCACACTACCCCACTACTGCGATCACAGTCCGATGACTTCGACCACACCCCTTCACGACAAGCCCCTATACCCATATATGCTGTGCCCAAACCCAAAAACAAATCTAGACCGCCCAATGATGAACCAAGATATAAGGCACCACCGCTCACCCTGCCGAAGCCTGGTGTTGCAGACGATATCAATCTACCCCCAGTAGGGTACAGCATACCAAATGGTGTTGGTGTACCATCAGATCAGTGTGACGCCTATCCAAGACTGCGAACGAATGCAGATACGGGTTCAAATTCTGCTATTTTCTACGGAGACTCTGAGCAAAGTTCCGGTTCAGAGGAGGAAGTGCAGCATACGCCAATGTAGTTAGTGGTCAGTACCCTCACTGTAGTATTCCTCCGCGTGGGCATGGGATCCACGACAGACCAGCGAGGCCGTGATTGGTTCGTTGTCAGTAGCTTGGATGAAAGAATATACGAATATTTTGGTATAGCTTTTGTATTCTATATATGACGATCAGCACATCCTTAATACTTTTTCAAGTAACTATACAGTACTGGTTCAAACCCAGTATTGCTAGAGGTCTTGAAGTGAACAGGGAGGGGGAAGGAGTAGTAAACACTCCAAAATTAAACCTTATCAGGTTTCCTGTATTTTACTGTAAAAGCGGATACTGTTTGTGTGGAAATCAGATCAGGTTTGTGAAAGGCCGTTTAGTCGTAACTGGGGTTAGAGTAGGTGATCACCAAGTCTAGTCCTTGGTTAGCGAGAATCGGTCGTTCTGATAATAGAACACTGAACCTTATCAAAGCGAACTATTGGTACAATATTTATAGTATCTATAGGTGTTTGGGTTTTTCGTAGATTTCTATAACCGTGTACCCTCCTTTCTTATATTGGCAAAAAAGTTTTTGAAATAAGAATATACACCACGTGATAAAAAAGGAAATTATTTGCTTTACTATTAGCTGTAAATGGTTCGCTAAAAAGCGGAAGCGCTGAAGTCGCTTTAGCGTTCAAATGGTTTTCCGTCTGAACCAATCACAATAGCGATGCTCATCATGACGTAACATAGAAACTTGTGAAAATGGTTGGCATATTAACATTACAATGTTTTTGTAAACAGTGAACATTGCTATAAAGTGATTGCTCTACTACCCTCTCTTTGAAGAACTACCGTTTCCTTACTACTCACAAGCTAGCAGTGTTGCGAACCGTGATAGTTCACTTTCAAACATTCATATCATTTTTTTTTTGTTCTCTAACCCAGTTAGAATTTCCGTACACCTTACTACTTCTGCACAATTTGTTTTTTTTGGGGGGGGATGAGTAGGAAGCTGCCGATTTTATAGAATAGCAGGATCCCACGAGTTATATTTTAGTCACTTTATTTCTTCTCCATTGACGTTCACCCTGCTATTTCTTTGTTTACAAGGTTTCCCTTGCTTTCAGCTGTACGACGATGTATTATTAGCGGGGCTTGAGTACAATTAATAGCCGCTCCCCTTGGACTTAAGCGCCGTGTGCTGCTAATAAGAATAAATATAACTTAATATATTTTCTAATCAATATGCATTGGGCATTTCTATTTTAGATAAGATACAGTTATTGGTGTTTTCTTGTGTGCTGTCCTTTTGGTATATATTTTCTAAAGGAGTTTTATACAAACTCTATTGCAGTCGAGTTCGACTTTGTATCATAGCAGAAACTATATATTTAGAAATAAAGTTTGCAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97798	Neogenin OS=Mus musculus OX=10090 GN=Neo1 PE=1 SV=2
Q90610	Neogenin (Fragment) OS=Gallus gallus OX=9031 PE=2 SV=1
Q63155	Netrin receptor DCC OS=Rattus norvegicus OX=10116 GN=Dcc PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001465 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001764 all species →	Biological Process	neuron migration	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0044295 all species →	Cellular Component	axonal growth cone	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene09792.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.