Gene detail

Detailed information of gene09792.t2 in Actinoscyphia liui

Genomic Location: chr3:10346430...10385430
NR annotation: KXJ15123.1, Neogenin [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene09792.t2

ATGTTCCTTTCTCTTGGTCAACTTATTACGTGTGTTTTCGTTACAGGGACAGTTTTTCTTAGCGTTGAAGGTGATTCCATTGAACTTGCCCCATATTTTACACAAGAGCCATCAGATATTATAGCTCAAAAGAATCATCCTTTAATCTTAAATTGTGCTGTAAAAGGAAACCCTAAGCCAACTGTTAAATGGAATCGTAATGGTGCAGAGTTAGTGCTTGCTGGAGATGATAGAAGGTCAATACTCCCAAATGGCACACTGTATTTTAAAACTATTGTACACACCAAAAGCAGTCGACCTGATGAGGGTCATTATCAGTGTGTTGCAAGCTCCCAAATTAGAAGTCAAGATTATAAAGTGGTCAGCAGAACTGCTAGAATTCAAGTTGCTGGTTTATCATCCAAAGTTCTTATAGAACCACCAACATTAAGAGTGCATTATGGTGATCTAGCAAGAATAGCATGTAAAGTGCGACATTCAATACCTAAAGCACTAATTACATGGAAACACAAGCACAAAGATGGAACCATTATCACAATAGTACCAAGTAAACGGCATGCATTTATTGATAATGGAGTGTTACAAATCAGTAATATGAAGTCAAGTGATGCAGGAGAGTACATGTGTACTGCAACCAACAAACTAGCAGGAAGGACACACTCTAGTAGTTATATGACACTAAGTGTGGAACCAGATAAAGGGCTCTTGAGAAGACCAGACTTCATAGCAACCCCTGTGGATACTAATACTACAAAGGGGGGTAGGGTAATACTTGAATGTGCTGCCTCAGGTGCACCAAAGCCTACTGTGCAGTGGTTCCTGGACTCAACACTAATATCGTATGACAATAGAGTACGTCTCCATGGTGAAAGCAATTTGGAAATCACCCAAGTGACATCAAGTGACGAGGGAGTCTATACTTGTAAAATTTCTGTGAATCGTTTTACTAAGTCTGAAAAAGCAAAACTACATGTTCACTATCCACCAATCTTTCAAACTAAACCTACAGACGTGAATGCGCATACCAATGATGATATTCAGTTTGATTGCACTGCAAGTGGCAGCCCTGCTCCCACAATGACATGGCTCAGGAATGGCTTTCCACTCGGAGCATCAGATTATGTCATTATAACTAAAACTGCTATTAAAGTCTTGTACATAATGTCGTCAGATACAGGCATGTATCAATGTGTGGCAGTGAATTACTTGGCTGAAATACAAGCTGCTGCAGAGCTATCTGTATTTGAAAAAAATATTCCACTCCCAAATCAAAAAACAACTGTCCAACCATCAACAACAGGAGCAACTACAACATTGCTTCCTACCACAACAAAGAAGCCAACTACAAGTCATCCCACCACAACTCAGCCCACTACACCTAAACGTACCACTACTAAACCCAGTACCTCCAAACCTGCCACTATTGTCACTGCACCAGTATCTGTGTATCCTGGACCTCCAGAAAATGTTGCAGTACGAACCAAATCTGAGACTGAACTTGAGTTAACATGGGACACTCCAAAGGGAACTGTTGACATGATACTGGCTTATAGCATTATCTATAATGACAAGATTGATAGTCCTGCTATTTTAGGCCTTGAAGTTGTGGCTGGTCATATCTATAAAAAAGTCATCAAGAATCTGAAAATAGACACTCAGTATTCCTTCCAAATATTTGCAAGGAACCGTCATGGTTCTGGTGAACTGTCTAAGCCTGTGTATGGTTGGACCGCCTCCAAAGGCCGTCCTGGAATACCATTGTCTTTGGCAGCAATAGGGATATCGTCATCACAGATAAAGGTTCAGTGGGCAGAACCCACCACAGGGATTTCTGTTAAAGAGTACATACTAGAATACAAAGAAGTAGGTACTGTGAATGCTACCATGTATTCTGTGTCAAAACGCAAGCACAAAACCCTCAAGAACCTGAACACATACACACAGTATGAAATATTGGTGTATTCTGTTAGTAAAGCAGACAAACGAAGCCATCCAGCAACCACTAAGGCTATAACCTTTGGAGGAGTGCCTAAAGGCAAGCCAACAGATGTGAGTGTTCGTGCTGATGGGTCGAGTACAGCGTTGATAGTCACGTGGAAGCCTCCTTTCTATGACATCGTTAATGCAAAGATCACCAAGTACTTGGTAGAATACTCAATACCAGACCAAAAACCAACTGCAGTCGAAGTAGAGGGTGACGTGTTAAAGCACAAGCTAAAGAATCTCCTTCAGAACAGTGTATACAAAGTTCGTGTTGCTGCAGGAACATCTTCGGGGTTAGGTGACTTCTCACAATGGGTTCGTTCCAATACTAGTGTTACAAAATGCTCAGAATCTCATCCTCCAGGCTTACCCACAGAGATGGATGTGTCCATTCCAAGTAAGGGCACAGAAATGATCAAGGTTGAGTGGCAGCCACCCATTGATGCTAGTCAATGGTGTGTGACTAGCTATGCCTTGGAGTATGGTGAAGGGACTCCATTCGTTAACAAAGTTACCCTCAATGCTTCGTCTAGAAGTTATCTTATAAGAACAGGAATAAGTTCAGGAAAAGAGTACGTCATCAAGCTAGTAGCCGTGAATAGTCGAAACAACAATGGTCCCAATGTACAGAAAGCTATTAAAATTCCACCCAATATCCATGCTCCAAGAAAACCAGTCAAACAGGTTCGTGCAACTCCACTGTCATCCCGTGCTGTCCGAGTGACCTGGATCGAGTCTGGGCAATCGCCCAATCTTTATCATGTGTTGCACACGTTGACAAACACCGTGGTGTATTGTGGGAATACTACAAAGAATTTGATAGTCTGTGGTGGACTGGAACCTTACACTTATTACACGTTTATTGTTAAAAGAAACGACGAGGAGAATGGTGGAACTGCGACGAACAGAACCATGGAAGACAAGCCTAGTCCACCACTGGATATCACGGGACGACTAGCAGAGGATAACAGCAGTGACCTTTATCTTAACTGGCAAATACCAGAAAAAGTGAATGGAAAAATTCTACAGTATCGTATCTTTTACTCGACCAATCATAGCATTCCTATCGAGATGTGGAAAAGGCAGGAAAGTAAAGGCAATACAATGAATGCACGGATAAAAAATATCCAAAAGGGGAAAACGTATTATTTCAAGATACAAGTACAAAACGGTGCAGCATGGAGTGATCTATCCAAGACTAAGATGATATCAACTGATAGCACTGGTGGACCTAAAGATAAAGACGACAAACCTAAAGGCAATGTCGGTGCCCAGGCTGGTGGTGGTGGTCTTAAAGACAAAACCCTGTGGATAGTCATAGCTGCAGTAGCCGGGGTCACTCTCATTGCTATCATTATCATCAGTGTAGTTTTATGTAAGAAACGTTCTGGCGACGACTCAAGTCCCAGAAAACCGCCGCCATCCTACAAAGCAGCTGTCATGGCGAATGGATCGGTGAAGAAGAAGAACAGAGAGGATAAACCACCAGACTTGTGGATCAACCACTCACAGAACATGGAATTAAAGTCGCTTTACCAGGCTAATCCACCGCCTGATGTGACCAATATACCAAGGAGTTCCACCGAGATGAAACCCCTAGATGACCACCCGATTGACAAAATCAAACTAGACCACGAGAAATGTTCCTTCCGTAAAAACAGTGAAGACCTTGAAGATGACTTACCTCCACCCCCACCGCAATTATTAGACCACGACGATGATGACGACGCGCCTTCACCTATTGCTATACCTGGGTATACTCCTTATCGTCCCATTGTCAGCTATCCACGCAATGTCGCCCCAGATGATGGTACGACCCAGTTATCGTATCCAGACTATCCCCTGACCAGCACCCCTCGGCACGCTAATGCTATACCACACAGTGAATCGTTTGACAACACAAGAGAACCCAACCACACTACCCCACTACTGCGATCACAGTCCGATGACTTCGACCACACCCCTTCACGACAAGCCCCTATACCCATATATGCTGTGCCCAAACCCAAAAACAAATCTAGACCGCCCAATGATGAACCAAGATATAAGGCACCACCGCTCACCCTGCCGAAGCCTGGTGTTGCAGACGATATCAATCTACCCCCAGTAGGGTACAGCATACCAAATGGTGTTGGTGTACCATCAGATCAGTGTGACGCCTATCCAAGACTGCGAACGAATGCAGATACGAAGGATGTTGTAGCAGAATTGGACAGCCAACTAGCAGGCCTTGAAGGGCTTGTCAAAGACTTGAATGCAATAACTCGTCTAACATAA

Transcript

gene09792.t2

GCATGCAACAAAACTATTAATGTCAGAAAAAAAAACTCAGAAATTACAGTAAAAAACAAACAATTAATCTTAGAAAATATAAAAATTTATTTAAAAAAATTGTACTTTCGAGAAAAATTCTACTGGAGCCTCTGGAGCCCCGGGGGTGAGAAATATCCCGTTCTGATTGGTTGTTGGCTATTGATTGACATGTGACGTTGGTCCATAACATACATCTTGCCAAGCATTGATTTACGAAGCATGTACAGTAGGTCTGGTTGTGGTTGTGGTTGGGGATTCACACTGTTTTTTCCTACTTGGACTTCAAATTACTCTTCCAAACTTGGCTACGAAACAGAGTAAAGATGTTCCTTTCTCTTGGTCAACTTATTACGTGTGTTTTCGTTACAGGGACAGTTTTTCTTAGCGTTGAAGGTGATTCCATTGAACTTGCCCCATATTTTACACAAGAGCCATCAGATATTATAGCTCAAAAGAATCATCCTTTAATCTTAAATTGTGCTGTAAAAGGAAACCCTAAGCCAACTGTTAAATGGAATCGTAATGGTGCAGAGTTAGTGCTTGCTGGAGATGATAGAAGGTCAATACTCCCAAATGGCACACTGTATTTTAAAACTATTGTACACACCAAAAGCAGTCGACCTGATGAGGGTCATTATCAGTGTGTTGCAAGCTCCCAAATTAGAAGTCAAGATTATAAAGTGGTCAGCAGAACTGCTAGAATTCAAGTTGCTGGTTTATCATCCAAAGTTCTTATAGAACCACCAACATTAAGAGTGCATTATGGTGATCTAGCAAGAATAGCATGTAAAGTGCGACATTCAATACCTAAAGCACTAATTACATGGAAACACAAGCACAAAGATGGAACCATTATCACAATAGTACCAAGTAAACGGCATGCATTTATTGATAATGGAGTGTTACAAATCAGTAATATGAAGTCAAGTGATGCAGGAGAGTACATGTGTACTGCAACCAACAAACTAGCAGGAAGGACACACTCTAGTAGTTATATGACACTAAGTGTGGAACCAGATAAAGGGCTCTTGAGAAGACCAGACTTCATAGCAACCCCTGTGGATACTAATACTACAAAGGGGGGTAGGGTAATACTTGAATGTGCTGCCTCAGGTGCACCAAAGCCTACTGTGCAGTGGTTCCTGGACTCAACACTAATATCGTATGACAATAGAGTACGTCTCCATGGTGAAAGCAATTTGGAAATCACCCAAGTGACATCAAGTGACGAGGGAGTCTATACTTGTAAAATTTCTGTGAATCGTTTTACTAAGTCTGAAAAAGCAAAACTACATGTTCACTATCCACCAATCTTTCAAACTAAACCTACAGACGTGAATGCGCATACCAATGATGATATTCAGTTTGATTGCACTGCAAGTGGCAGCCCTGCTCCCACAATGACATGGCTCAGGAATGGCTTTCCACTCGGAGCATCAGATTATGTCATTATAACTAAAACTGCTATTAAAGTCTTGTACATAATGTCGTCAGATACAGGCATGTATCAATGTGTGGCAGTGAATTACTTGGCTGAAATACAAGCTGCTGCAGAGCTATCTGTATTTGAAAAAAATATTCCACTCCCAAATCAAAAAACAACTGTCCAACCATCAACAACAGGAGCAACTACAACATTGCTTCCTACCACAACAAAGAAGCCAACTACAAGTCATCCCACCACAACTCAGCCCACTACACCTAAACGTACCACTACTAAACCCAGTACCTCCAAACCTGCCACTATTGTCACTGCACCAGTATCTGTGTATCCTGGACCTCCAGAAAATGTTGCAGTACGAACCAAATCTGAGACTGAACTTGAGTTAACATGGGACACTCCAAAGGGAACTGTTGACATGATACTGGCTTATAGCATTATCTATAATGACAAGATTGATAGTCCTGCTATTTTAGGCCTTGAAGTTGTGGCTGGTCATATCTATAAAAAAGTCATCAAGAATCTGAAAATAGACACTCAGTATTCCTTCCAAATATTTGCAAGGAACCGTCATGGTTCTGGTGAACTGTCTAAGCCTGTGTATGGTTGGACCGCCTCCAAAGGCCGTCCTGGAATACCATTGTCTTTGGCAGCAATAGGGATATCGTCATCACAGATAAAGGTTCAGTGGGCAGAACCCACCACAGGGATTTCTGTTAAAGAGTACATACTAGAATACAAAGAAGTAGGTACTGTGAATGCTACCATGTATTCTGTGTCAAAACGCAAGCACAAAACCCTCAAGAACCTGAACACATACACACAGTATGAAATATTGGTGTATTCTGTTAGTAAAGCAGACAAACGAAGCCATCCAGCAACCACTAAGGCTATAACCTTTGGAGGAGTGCCTAAAGGCAAGCCAACAGATGTGAGTGTTCGTGCTGATGGGTCGAGTACAGCGTTGATAGTCACGTGGAAGCCTCCTTTCTATGACATCGTTAATGCAAAGATCACCAAGTACTTGGTAGAATACTCAATACCAGACCAAAAACCAACTGCAGTCGAAGTAGAGGGTGACGTGTTAAAGCACAAGCTAAAGAATCTCCTTCAGAACAGTGTATACAAAGTTCGTGTTGCTGCAGGAACATCTTCGGGGTTAGGTGACTTCTCACAATGGGTTCGTTCCAATACTAGTGTTACAAAATGCTCAGAATCTCATCCTCCAGGCTTACCCACAGAGATGGATGTGTCCATTCCAAGTAAGGGCACAGAAATGATCAAGGTTGAGTGGCAGCCACCCATTGATGCTAGTCAATGGTGTGTGACTAGCTATGCCTTGGAGTATGGTGAAGGGACTCCATTCGTTAACAAAGTTACCCTCAATGCTTCGTCTAGAAGTTATCTTATAAGAACAGGAATAAGTTCAGGAAAAGAGTACGTCATCAAGCTAGTAGCCGTGAATAGTCGAAACAACAATGGTCCCAATGTACAGAAAGCTATTAAAATTCCACCCAATATCCATGCTCCAAGAAAACCAGTCAAACAGGTTCGTGCAACTCCACTGTCATCCCGTGCTGTCCGAGTGACCTGGATCGAGTCTGGGCAATCGCCCAATCTTTATCATGTGTTGCACACGTTGACAAACACCGTGGTGTATTGTGGGAATACTACAAAGAATTTGATAGTCTGTGGTGGACTGGAACCTTACACTTATTACACGTTTATTGTTAAAAGAAACGACGAGGAGAATGGTGGAACTGCGACGAACAGAACCATGGAAGACAAGCCTAGTCCACCACTGGATATCACGGGACGACTAGCAGAGGATAACAGCAGTGACCTTTATCTTAACTGGCAAATACCAGAAAAAGTGAATGGAAAAATTCTACAGTATCGTATCTTTTACTCGACCAATCATAGCATTCCTATCGAGATGTGGAAAAGGCAGGAAAGTAAAGGCAATACAATGAATGCACGGATAAAAAATATCCAAAAGGGGAAAACGTATTATTTCAAGATACAAGTACAAAACGGTGCAGCATGGAGTGATCTATCCAAGACTAAGATGATATCAACTGATAGCACTGGTGGACCTAAAGATAAAGACGACAAACCTAAAGGCAATGTCGGTGCCCAGGCTGGTGGTGGTGGTCTTAAAGACAAAACCCTGTGGATAGTCATAGCTGCAGTAGCCGGGGTCACTCTCATTGCTATCATTATCATCAGTGTAGTTTTATGTAAGAAACGTTCTGGCGACGACTCAAGTCCCAGAAAACCGCCGCCATCCTACAAAGCAGCTGTCATGGCGAATGGATCGGTGAAGAAGAAGAACAGAGAGGATAAACCACCAGACTTGTGGATCAACCACTCACAGAACATGGAATTAAAGTCGCTTTACCAGGCTAATCCACCGCCTGATGTGACCAATATACCAAGGAGTTCCACCGAGATGAAACCCCTAGATGACCACCCGATTGACAAAATCAAACTAGACCACGAGAAATGTTCCTTCCGTAAAAACAGTGAAGACCTTGAAGATGACTTACCTCCACCCCCACCGCAATTATTAGACCACGACGATGATGACGACGCGCCTTCACCTATTGCTATACCTGGGTATACTCCTTATCGTCCCATTGTCAGCTATCCACGCAATGTCGCCCCAGATGATGGTACGACCCAGTTATCGTATCCAGACTATCCCCTGACCAGCACCCCTCGGCACGCTAATGCTATACCACACAGTGAATCGTTTGACAACACAAGAGAACCCAACCACACTACCCCACTACTGCGATCACAGTCCGATGACTTCGACCACACCCCTTCACGACAAGCCCCTATACCCATATATGCTGTGCCCAAACCCAAAAACAAATCTAGACCGCCCAATGATGAACCAAGATATAAGGCACCACCGCTCACCCTGCCGAAGCCTGGTGTTGCAGACGATATCAATCTACCCCCAGTAGGGTACAGCATACCAAATGGTGTTGGTGTACCATCAGATCAGTGTGACGCCTATCCAAGACTGCGAACGAATGCAGATACGAAGGATGTTGTAGCAGAATTGGACAGCCAACTAGCAGGCCTTGAAGGGCTTGTCAAAGACTTGAATGCAATAACTCGTCTAACATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97798	Neogenin OS=Mus musculus OX=10090 GN=Neo1 PE=1 SV=2
P97603	Neogenin (Fragment) OS=Rattus norvegicus OX=10116 GN=Neo1 PE=1 SV=1
Q90610	Neogenin (Fragment) OS=Gallus gallus OX=9031 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001446 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001764 all species →	Biological Process	neuron migration	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0044295 all species →	Cellular Component	axonal growth cone	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06766	NEO1; neogenin	-	Axon guidance	ko04360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.