Gene detail

Detailed information of gene09907.t1 in Actinoscyphia liui

Genomic Location: chr3:12459068...12485336
NR annotation: XP_028518310.1, uncharacterized protein LOC110250191 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene09907.t1

ATGTGGTTTGTCGTGAGTACAGCAGTAATCATGATTATCTCGTTAAAGGTTGCTGTTGCTTCGTGCCCTTCATACATCATTCCAGAAAACCTCAAGCGTTCGTTCATGAACGTTGCAAGCAAAGACCAAGGCGCAACCTGTACTGCCACATCAGTGGACGCTCATTTTCTGTGCGAAAAAGCTATCGACGATGACCTGGACACCGAGTATAAAGTCAGTTCATCAGACAACGCCATTGGGACATCTATTAATATATCATTTCCTAACAAGCATCTTATAAACATCGTGAAAATCACACAGTTACAAGCATCTTCTGCTCAGATTGAGCAGATCGGGATAACATTCGATGATGGAGAAGGAGTTGACGAATATGTTAACTTAACGAAGAATGCGGCTAAAGGAGAGAAATTTACATTCCATGAGAGATGGATAAGCAGTATAAATCTAACCATTCTAACCGTACACGAAGGATCGACAGGGCATGGGTACAAGTCAATAGAAGTGACCAATAGCCTGGCTTCTAATGACAAGCTGTGTAACTATCTCACACTGGACACCACCAATACGTCATCCCACATGGGCGTGTACTCTGACATGGCCGTCTTGGCCATCATGGGTAGTGAAGTACATGCTATTCTATCAACTACAACATCGTCATCGTCACCTCGCTACGTCCTCAGATTTGGAGCCGATTCGAACACTAAGTTAAAGCTAGACCGCTACGGCCCCCCTGGCGTAGATACTGCTGGTTTAAAGAAGGCGTCCAAGTCTTTAAGCTCAAGTAAATGGAAGATGTTCAGTGTTGATTTTAAAGGAAATAAGATTGTGGTCAGTGCTGGGAGTGACATTCTACTGCAGCACGACGATGCAGCCAATCATATCCAAGTGAAATATGTGTCTTTTTATAATCCTGGTGCTACTACGGCAACGATACTCTATTGTAACAGAGAAGTCACGTGTTACAAAGATGCCAACCACTTCTGGCCTTTGGAAAAACCCACCATTACTGACGTCATCACTGGGAAAGCCGAAGTCACCGACATTATCAACGTCAAATCAGGACCAGCAGCGGACGTCGTCGCGAGCGCAGCCATAAGCTTGAAAAACAATGTCCTGTCTCTAGGTGACTTTTCCAGTAAATGCGTCAGTAACTTGAAACTTTGCAAACACGGGATCACTGTAGGGTTTTGGTTTTACATCAACCCCACCGCTACGGGGGAGCAAGTACTCTTGTCCTCAGACACTAACTCCCCCGGACTCCAAGTAAACTTCAACAACGACGAAGTCCACTGTCATGCCTATGACGGCACATCCAAGTATTACGCAAAGTTAAAAGCCAAGAAAAGCGTCTGGCATCACGTGACAATCACGTGGCATTCCTTATTAGGGATGTACATGATGGTGGACTTTAACAGTAGAATCAGGGCTAGTGATAGTCTTGAGTCCAGACCTACAGATACCAATACCATGTTAACTCTAGGAGCGAAGAACGACTTGACTGGCAGCGCTGACGCTTCTGTTAGTAGTCTGGTCATTTGGGAAAAAGCCTTAGAACTACATCGTGTACAGAAGATAGGAATCTGTGCGAATGTTTTCCAAGAGCCTCCACTTTTGAATAGCACCAATGTCTATGGCATTGTCCCTTATGATTCAATCAAGGCAAGCAGTGATAAAGGCAATACAGTCTATTACTCACAGCTCAACTTTAACGATGGTACGGGTAATTCAGCGGGATGGCAACCAGTGGATACACACAGACAATACATCCAACTTGACCTTGTCATGGGTCGTACAATAACACGTATAGCTACACAAGGAGGCAACACCCAATCCCAGTGGGTGACACTGTTCACTATGTCTTACAGCTTGAACGGGCTGCAATGGGAACATTACAAAATCAATGGTTCGGTTTACAACTTTCCAGCCAACACAGACAGCAACAACATAGTGTCACATGCAATTTATCCCAGCATTGAAGCCCGCATGATACGATTCATGCCGTCTGCTTGGAACACTTCTATTAACATGCGCGTCGGCGTATTCTACAACGCAGAACCATTCCTCAGCAAAGGTTGCTATAGTAGAACCACACTGGACCTCACTAAACCAAGCAATGACGTTGACACCCACGAAATGCATCCTGGGATGTGCGTGACGTCATGTGGTTTCAGGAAACTCACGTACGCCGGTGTGTCCGTAGGAAACCGATGCTATTGTTTCAATACGTTGCCTAGCAACGACGTCTCAAAATACAAGTGCAACCAGCCTTGTGAGGGAAACCCCGCATTCAAGTGCGGCAGCCAATCATATGTGAGTGTCTACGAAGTACGAGAGAGTTTGGATTTTCAGTTTACTGTGTCGATGCCAAGTGGTGTAGAAATGTTGACTCCATTCACAGCCACTTCCAACAAGCAGCGATTCTATGCTGACTTTGGAGATGATAGAAAAATGAGCAATAGTACTGCAGCGATAGAATACTTTGTGCTAGGGAACCACGATAGAACGGTTTCATCATGGACCTGGATAGGTCGATATGGTACTCCAAGGGCAAGGAAAGTAACGAATGCTCTGGATGTATACTGGTTGGTGCTGGGAGCAGACATCGTGTACGGCAGAAGGATATTCGAGACAGGAGTAGTGAATGTTTTGTACTTGTCGTTAGTTGAAGGAAAAGACGTCACGATCACTCATTCATCATCAATAAGAAAAACGGTCTATAGTTACCCAGGACCTGCTGTTCTGGACACACCAGCACTCGATGAATCGCCAAGTTTCGTAACAAGTGGACCAACTGACGTGGACAGAGTGTACTTAATGCTGGATAAAGGTTTTAAGAACGGTTATCTGAAAGCGTTCAGCGTTAATGTTGCTTCCACGGGTTATCTTAAGCTACAGGTCTACAACCCCGTCTGCCGGTGGCCGAACGAAAAAGCTTACTGCTATGCCATTGGCAACTGTAGATCTTCCGTAGCAGAATGCAGTGGAGCATTCTTGAACAGCAAAATAACGTGTTCTTCTTCAAGTGCATTCTGTATAACTACATCTACCTGCACCAAGGCTAACATGGTGTGTGCTCAACCTGATGGTGGCAGCAATGGGACCTTGGCCACCAACTACCAACTAACATACGAGCACCAAGTGTACGTGACCGAGGGGAGACATGTTTTCCTTGCCAAAGAGAACATATCAAAGTATGGTTATAAACTTCGCCAAGGAAATGTTATTGGAATTACCTTACCTGCTGGTATAAGTGCAGAGGTATACACAGCGAAGTCCAAAACCAGGATTCCTTATCAAGCGAACCTGACATTACATCTTGGCAGTATTTACTCGACAGCTAATTATAACGACACAGCGTTGGATTATTCACCTCAAGTACAAGCGACGTACATCGTACCGGCCTCTTACAGGCTTGGAATCACCTGCAGTAGTGTTGGGGTTTACGCAGACACGTTTGATTTCTCAAATGCGAGGAATAATGAAATAAAAACCGTTAATTACATCTGCACGGAGCGTATTCGTGAAGTTCGATGGGTAGTTGCTCCATATGCGGCAACATATACCCCTTACAACGTGACATTTCCTAGTCACACTGGATACAATGTCACGCATTTGGTGGAGTTTGACCAAGAAACGAACTATACTCAAACCTACCGCCGCGTGGAGAACAAAGTCACATACAGTCACGTGTTCCAGTCCATAGGTAACCACACTGTCACGGTGGTAGCGTTTAACATCCTTGGGTCTAAGAGCCGACAGTGCGTTATTCTTGCACTGCATGCAATCGTCGATGTCTCGGTTGATACTATCCCTCCCGCCATATTGAATGATCCCGTTAACGTCACATGGACAGTGCAGAACGGGACGGAAACCCACTGCAATGTGACCTTCGGTGATGGCACAGAGAAGACGGTGCAGACATCCACTATAAACGGAACGCAGAACTTTACGTTAGTTCACACGTACACGGCTGCAGGAGAACATTTGGTGAACATCACTTGTGGTAATCTAGTGAGTAAGGTTTCTAACAAGACACTTGTGGTTGTAGAGATTCCAGTAGATGGACTGGCATGCAAGGTGGTCCATCTGAACAGAGACATCGAGGTAAACGAGACGATCAAATTTAAGGCTACTACAACACAAGGCACAAACCCAATAGCTCGCTACCACTTTGGAGACGGAACCACCAATTTATCCCGGGAGTTCAAAGTCGATAAGTCGTTTTCCTACTTTACAATATTTCATGGCAACATAACCGTTTACAACAACGTCAGTTCCAAAAACTGCTCTTTGGTATTTAAAGTACATAAACCTGTTTATCCCATAAAGATTACGCAAATCTTCTCAAAAGATGCCAACGTTTCTACTCCTAGCGAATACATGATGAACATTTCAAGTGGCAACGACTTCATTTGTGATTGGGATTTTGGTGATGGGGTAGTCAGGCGAGGCGGGAGTAACTTCAGCAAGTTGGGAGAGCCCGTGTTTCACACCTTCGCGTCTGATGGTTGTTTTTTTGGGAAGGTCAGATGTATCAATCGTCTCTATACTGGATATGGTACCACGAAGGCATGTGTTTTCCAACCTATTACAAATGTGAGCCTTAAAGCCCCTCTCGTGAACAACATCAACCTCGATTACCAAGTAACCTTTGGTGCAGCACTGGGAACTAATATCACTTACAACCTAACATGGACAAGCGTCCAGACTTGGATTCCTGTAGATATTCCCTTCACAATATCAGCTGATACGACCAGTGGAAGTGCAGTGATTTCCAAAGCACATTTCCCATCAATGGGTGTTTACCAGGTAACGTTGTTTGCCATTAATAGCGTGACTCCTCGAATAGTCAAGAAAAAGTCTGTTTACGTGGAGATATCTATACAAAACTTTTATGCCAAAAGCAGCCACAAATACATCGAAGTCAATCACGAGGTCAATCTTACTGCTTCTGTAAGTACAGGTTCTAATGTCACTTTCACGTGGGACTTTAAAAACGGAACTAACCAATCACGTACGCATCAAGCAGATACACTACGACTGACAGGCGATCACGTGGGACACTCGTTTTCAGATCATGGCGTCTATGACGTCATGGCCATAGCGGCCAACCCCTTAGGAAAGGTTTCAGCGGTTGTTACCATTTTTGTCCAATATCCTGTTAAAGAACTGAGCTTGACTACAAACAGTCCCCAAATCATCCCAGATGGTAGGACTTGGTTCACGGTCATTGTGCCTGACGGCATACACGTACCAACAAACGCAACTATTGACGTAAAATACCAGGCTAACGGCGCAGTTCAAGGTCTTCCATTTGGGTCCCTCAACATCAGTAAATTCTCCAAGGTTATACCCACGCCTGGTTTATACTTTGTAAATGTGACGGTCAAGAATGAGATCGGCTCGCAGCGACTTAATACAACTATTAATGTTCAAAGAAAAATCCAAGGTTTGAGGGTTGCTACAATGCACACAGATGGAGATGCAGGCTTCGGAGCACCAGGTAGAGGACCTGCGTACAATATCTTTCCTCGTGAATATCCAATCAGATTTAATGCTATTACACGTGATGGATCGAATGTGACTTTTTACGTGACGTACGGTGATGGATCAGGTATATATATTAGTAGCACTCAGAAGTACCACACCACTCACCAGTACCCAACTGAAGGAACGTATGAAATTGATGTAATTGCAAATAACTCGGTCAGTGAGGTGAGATATACCACAAAGATCGTTCTCATGGATAGTAATGTCAATCTCATTTTTGGAAGCAACTCGCCGACAAAGTACAACTTAAAGACTGAGCTCCGTGTGCAGCTGAGCCAAGTTGGAAGCCATGCGTGCTGTTTGGTAAACCTGACAAACAACACATACTTCCTGTACAAAGACAAACCAACTACAACATGTAGAAGTGACTGGGCTGTGTTGAGTAGCAACCACAAGATTGTGCCTTCCAAACATAACATTTCCATAGTATTGTCTTTCAAGTTCTGGCAAGAGAGGTACTATCACGCGAAGACATCATGCTACAACACTGTCTCATACGTAGTGAAATACCACTGGGTTATCGTTCTTGCGTTACCATGCGGCTTCCCGAAGGTTTCTATCAAAGAAACGGGAAGAACCTTTACAAACCCTAGAATATTACAACGCTCTCAAAGCATCAAGATGCACTCCGAGGTCTCCATGCGTTGCTACTCTTCCCGAGCATCAAAATTGCTCTGGACTATCTACAAACTCAACAGCACTGGACACGCAAGGGAACCATTTTTAAATCTTCCCGAAGGCAGCATTACTAACAGGTCGATACTGAAGCTTCCGCCAAGGGCATTACCTTATGGTACGTATATGTTCCTGTTGAACGTGAGTGTAGTCAACCTCACTCTTATTGACAGCTCGCAAGTGGGCTATGGAATGGTCAAGGCTTCGCCATTACAGTGCTTTCTGCATGGTGGCAATGGTTGGCACCAGTCTGTATATCGCGATACTGTGCTCGATGGACACTACTCTTTCGATCCTGATGAATCTGAAGCAAACCAAACCAATGAAATCGAGTACTACTTGTACTGCAAGAAAACCAACGCCAGCTACACATTCCCTGATGATCCTGAATCAGAATCCAGAGGAAACGCAAGTAGTGGTGAAGGATGTTTGTCAAAGCCAGCAGGACTGGTGGCAAAAGGACAGAGTATCAAAACCTATGGTAACAACACCTTTAATGGAAACGATTCGTTGCATTTTCGGCTCTACTGCAGAAAAGACTCCCGTATGGGAACTTTTGATGTGTTCCTGGAGATGACAGAGACTGATCCACCCCAGTGCTTTATCAGGTAA

Transcript

gene09907.t1

Protein

gene09907.t1

MWFVVSTAVIMIISLKVAVASCPSYIIPENLKRSFMNVASKDQGATCTATSVDAHFLCEKAIDDDLDTEYKVSSSDNAIGTSINISFPNKHLINIVKITQLQASSAQIEQIGITFDDGEGVDEYVNLTKNAAKGEKFTFHERWISSINLTILTVHEGSTGHGYKSIEVTNSLASNDKLCNYLTLDTTNTSSHMGVYSDMAVLAIMGSEVHAILSTTTSSSSPRYVLRFGADSNTKLKLDRYGPPGVDTAGLKKASKSLSSSKWKMFSVDFKGNKIVVSAGSDILLQHDDAANHIQVKYVSFYNPGATTATILYCNREVTCYKDANHFWPLEKPTITDVITGKAEVTDIINVKSGPAADVVASAAISLKNNVLSLGDFSSKCVSNLKLCKHGITVGFWFYINPTATGEQVLLSSDTNSPGLQVNFNNDEVHCHAYDGTSKYYAKLKAKKSVWHHVTITWHSLLGMYMMVDFNSRIRASDSLESRPTDTNTMLTLGAKNDLTGSADASVSSLVIWEKALELHRVQKIGICANVFQEPPLLNSTNVYGIVPYDSIKASSDKGNTVYYSQLNFNDGTGNSAGWQPVDTHRQYIQLDLVMGRTITRIATQGGNTQSQWVTLFTMSYSLNGLQWEHYKINGSVYNFPANTDSNNIVSHAIYPSIEARMIRFMPSAWNTSINMRVGVFYNAEPFLSKGCYSRTTLDLTKPSNDVDTHEMHPGMCVTSCGFRKLTYAGVSVGNRCYCFNTLPSNDVSKYKCNQPCEGNPAFKCGSQSYVSVYEVRESLDFQFTVSMPSGVEMLTPFTATSNKQRFYADFGDDRKMSNSTAAIEYFVLGNHDRTVSSWTWIGRYGTPRARKVTNALDVYWLVLGADIVYGRRIFETGVVNVLYLSLVEGKDVTITHSSSIRKTVYSYPGPAVLDTPALDESPSFVTSGPTDVDRVYLMLDKGFKNGYLKAFSVNVASTGYLKLQVYNPVCRWPNEKAYCYAIGNCRSSVAECSGAFLNSKITCSSSSAFCITTSTCTKANMVCAQPDGGSNGTLATNYQLTYEHQVYVTEGRHVFLAKENISKYGYKLRQGNVIGITLPAGISAEVYTAKSKTRIPYQANLTLHLGSIYSTANYNDTALDYSPQVQATYIVPASYRLGITCSSVGVYADTFDFSNARNNEIKTVNYICTERIREVRWVVAPYAATYTPYNVTFPSHTGYNVTHLVEFDQETNYTQTYRRVENKVTYSHVFQSIGNHTVTVVAFNILGSKSRQCVILALHAIVDVSVDTIPPAILNDPVNVTWTVQNGTETHCNVTFGDGTEKTVQTSTINGTQNFTLVHTYTAAGEHLVNITCGNLVSKVSNKTLVVVEIPVDGLACKVVHLNRDIEVNETIKFKATTTQGTNPIARYHFGDGTTNLSREFKVDKSFSYFTIFHGNITVYNNVSSKNCSLVFKVHKPVYPIKITQIFSKDANVSTPSEYMMNISSGNDFICDWDFGDGVVRRGGSNFSKLGEPVFHTFASDGCFFGKVRCINRLYTGYGTTKACVFQPITNVSLKAPLVNNINLDYQVTFGAALGTNITYNLTWTSVQTWIPVDIPFTISADTTSGSAVISKAHFPSMGVYQVTLFAINSVTPRIVKKKSVYVEISIQNFYAKSSHKYIEVNHEVNLTASVSTGSNVTFTWDFKNGTNQSRTHQADTLRLTGDHVGHSFSDHGVYDVMAIAANPLGKVSAVVTIFVQYPVKELSLTTNSPQIIPDGRTWFTVIVPDGIHVPTNATIDVKYQANGAVQGLPFGSLNISKFSKVIPTPGLYFVNVTVKNEIGSQRLNTTINVQRKIQGLRVATMHTDGDAGFGAPGRGPAYNIFPREYPIRFNAITRDGSNVTFYVTYGDGSGIYISSTQKYHTTHQYPTEGTYEIDVIANNSVSEVRYTTKIVLMDSNVNLIFGSNSPTKYNLKTELRVQLSQVGSHACCLVNLTNNTYFLYKDKPTTTCRSDWAVLSSNHKIVPSKHNISIVLSFKFWQERYYHAKTSCYNTVSYVVKYHWVIVLALPCGFPKVSIKETGRTFTNPRILQRSQSIKMHSEVSMRCYSSRASKLLWTIYKLNSTGHAREPFLNLPEGSITNRSILKLPPRALPYGTYMFLLNVSVVNLTLIDSSQVGYGMVKASPLQCFLHGGNGWHQSVYRDTVLDGHYSFDPDESEANQTNEIEYYLYCKKTNASYTFPDDPESESRGNASSGEGCLSKPAGLVAKGQSIKTYGNNTFNGNDSLHFRLYCRKDSRMGTFDVFLEMTETDPPQCFIR

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000050 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF12248 all species →	Methyltransf_FA	Farnesoic acid 0-methyl transferase	Family	Interproscan
PF02010 all species →	REJ	REJ domain	Family	Interproscan
PF00801 all species →	PKD	PKD domain	Domain	Interproscan
PF01822 all species →	WSC	WSC domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR014010 all species →	Domain	REJ domain	Interproscan
IPR022041 all species →	Domain	Farnesoic acid O-methyl transferase	Interproscan
IPR002859 all species →	Domain	PKD/REJ-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46730 all species →	POLYCYSTIN-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene09907.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.