Gene detail

Detailed information of gene10093.t1 in Actinoscyphia liui

Genomic Location: chr3:15865418...15873805
NR annotation: XP_020898913.1, 85/88 kDa calcium-independent phospholipase A2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene10093.t1

ATGGCAGACGACTGCGACATAGTCCGGGCCCTAATCGTATTCGGGGCTGATGTGAATGCTACCAACCGCAAACACCACACAGCTCGACACATCGCGACTCAAGAACATCACCCAAGATGGAAAGACGTTGTGGATGCGCTGTGCCATATGGGAGCGTCTGCATGTGATAAAGGAAAGACCGGTTGTAACCTTCCTTGTAGTAAAGAATTTAAAGGAGAATTACGAATTGGCAATGCTGTCAATAATGTGTGTGCTGGACTATTTCGCTCGCCTGGATATGAAGATCTGATCAGAGCTGCTGTTTTAAGTGCTGCCCTATACAGCTCACCTGGAAAGGACTCAGTGGATGGTCAAAAACCGCAATCAACAAAATCAATATTCAAACAGAAATATGGACGCGATTCGGTCTTATCAATGGACGGGGGAGGAATCCGGGGCCTGGTACTAATACAATTACTGCTGGCCATTGAAGAGTTTACTGGTGAACGTATATTTGATTTATTTGACTGGATTGGTGGCACCAGTACTGGTGGTATACTAGCCCTTGCAATAGTGCATGGGAAGTCTGTTCGATTCTGCCAAGGTTTATACTTCATGATGAAAGATGAGGTGTTCAATGGACCACGCCCATACAACTCAGAACCGTTGGAGAGATTCCTTAGAGAACAGTTTGGCGAGAACACAACCATGACATCAGTGACCCACCCTAAAGCTCTAGTTACCGCTGTACTAGCAGATCGTCGTCCGGCTAGCTTGTACTTCTTTAGAAACTATGACATGCCTGAAGATAAGCCCAATGCAGCTGCCAAGTCACCTTTTCCTGCGCCACCCGTACCGTCAGACCAAAAAGTATGGCGAGCAGCAAGAGGAACAGGTGCGGCGCCGACGTTTTTCCGCGCCATGGGACGTTTTCTCGACGGTGGCTTAATAGCTAATAACCCCACCCTAGACCTATTCACAGAGATCCACAAGTACTACAAGGTCTATGATCCTGACAGTACGAATAAGGTCCCTGGGTCATCAAGCATTGGTCTCGTGGTGTCCCTCGGTACAGGTGTCCCTCCCACGGAGATTGTTATGAACATCGATGTCTTTAAACCGGATTCCATATGGGACGCAACCAACATCATCACTGGTGCGCGCGCACTTGGTACCTTACTGGTTGATCAGGCCTGCGCGACCCATGGAGCCGTGGTAGAGCGTGCAAGAGTCTGGTGTGAGATGATCGGGGTACCTTTCTATAGGCTGAGTTCTGACATGTCGGTAGAAATTGGACTTGACGAGACGGACGATAAACTACTGGTTAAGATGTTATGGGAAGCTAAAGTATATGTACTACAGCATTTTAAAGAATTCAAAGAGCTTGCTGTCAAATTGACGACTTAGAGAAAGGCCACATGCACACACCTATTTCAAAAAATAGGCAGTCAACGACTGCATGTATCTACGGGTCATATCTTATTAGTGAAATTATAGTAATGATCATGGGTGTTAATAGACTACCGCGTCTAGAATAGTACCTTCTCTTGTTTCCACTGTTTTTTTGTGAAAACACATTTTTTAATGAGTTTTGGTCTTGCTTCCAAACTGAAACGGTCGAAAATGCATACAATTCAAAATGAAGACCTATTCTATTAGTAAGAGTATTACTGAGTGTAGACGCGAACTTAGTTAGCTAGCTATGTCATACTGACAGTCTAACAACCATGATCATTACTGTAACAGAGATGGCACTATATCAATCGGTTATTATTATTATTGTATTAGTGTGGATAGATGAATACGGCATCTTTTGAAAAGGAAGATCTTTGTCTTTAAGTCATTTATAGTTTTTGAGAAACAAGACAATTAGGATATTTTAAATGCTCATGCTGATTTACATTATAAACACAGTGAACTATGAAAAAATCTCTACAAACAAACAATTCGAACATTCGATCTTTATCTTTTAATCTTTAATCGTAATGACTGCCATTTAGCTAAGGCTAATTCCGGCAGGAGGGGCAGCGGCCCCGAGATTACATAACAATCGTACATTACAAAAATAAATAAAACACATAATCTAAATAATAAGTAAATAGTAAATAGGTAGTTAACAATAAAGAAGCATAAACATAAATGTTGAC

Protein

Uniprot

Uniprot term	Description
P97570	85/88 kDa calcium-independent phospholipase A2 OS=Rattus norvegicus OX=10116 GN=Pla2g6 PE=1 SV=2
O60733	85/88 kDa calcium-independent phospholipase A2 OS=Homo sapiens OX=9606 GN=PLA2G6 PE=1 SV=2
P97819	85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus OX=10090 GN=Pla2g6 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01734	Patatin	Patatin-like phospholipase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002641	Domain	Patatin-like phospholipase domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR016035	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR047148	Family	85/88 kDa calcium-independent phospholipase A2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24139	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016290	Molecular Function	obsolete palmitoyl-CoA hydrolase activity	Interproscan
GO:0047499	Molecular Function	calcium-independent phospholipase A2 activity	Interproscan
GO:2000304	Biological Process	positive regulation of ceramide biosynthetic process	Interproscan