Gene detail

Detailed information of gene10117.t2 in Actinoscyphia liui

Genomic Location: chr3:16273508...16287334
NR annotation: XP_028515158.1, ankyrin repeat domain-containing protein 50 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene10117.t2

ATGACCTGTGTTGAGAACGACTTCTCATCGGTTGTAGCTTTGTCGTTGCTGGTTGTTGTCGTCTTATTCCAGGTATTAGGACTGGGTCTTTATCAAGCAGGTGCTCTTTATCTCAAGTCCACGAACACTCTTCTTATCCAAGCCCTTTTGAATATCGTACTTGGGTCAATATTGTGGTACAGTGTTGGGTACTCTTTGGTATTTGGAACATCGTCAAGGGGTTTTATTGGAAGTCCTTCCATGGCTTTCTTCATCGACGTTTCTGTAACCAACTGTTCTACGCATGCGCAGAATGTACCTAATATCCTCTTTGCGACGTTTGAAATGTTACTTGCCGTGTGTGCACCGTTTATGATCGTTGCTCCATGGACAGAGTACATCAGTATGATCGGTGCTGTGTCTGTCTTTCTACTTTGGCCCCTTGTTGTTTATTATCCATTATCTCATTGGATCAGAGGCGGTGGCTGGCTGGAGCAAATGGACATCATAGACTATGCTGGAAGCTTAACCGTTCACACAAGTGCTGGAGTTGCTGGTCTTGTCTTTACCAGGGTGCTCAGACAACGTTTAGTTGATCAAGTGGACCACAAGTCTTCTCGTCGTTTTGGAGACCGTGTATTTTATCACGTGATCTTTATTGTTGGGGCCTTGGTTACGTCATTTGGTTGGTCCCTGTTTAACTTGGGTTCCGTAGGAATGGCACAAAATGCTGGTATTGGGCTCGCTGTGGTGAATACCCATCTCTCTTCTTGTGCGTCATGTCTGTGCTGGGTTATCGTGATTGCCATTGGATCGAGTCAGTGTCATTATTGGGATTTAATGACAGGAATTATTGCTGGTATTGTAGGGGTCAGTGCCGCCCCATGCTCCATGCACGCCTGGGCAGCGATTTTAACAGGATTAATTGTTGGTTTTACATCGTCTTTTGTCCAATCCTGTGTACGCAAGTACGGAATATCTTGGACCAATGGGAGCGAGGTAGACTTCGCGTACTCTCATGGTATTCCGGGAACACTTGGAGCTCTAACCGCTGGCCTTTTTACCGACCCCTCCCTAGATGCACATGGACACAAAGGAGCTTTTTATTCAAATGGTAAACAGCTTGGTGTACAGTTCCTTGGAGTCGTTATGGTAACAGTATGGTCAGCGGTGTTCACCTACCTAATCACCTGGTTTATTCATTGTACTGTAGGGTTTAACATAACTCGTAACACAGAGCTCAGCGTAGATGGTGCATCAAGCAAAGTCCACAGTGGTTACCGTACAAAGCTGTTTACGGCAGCGATGAACGGACAGTTGCAAGAATTAGAAGAACTGGCAGCACAACACGTCAACTTTAACATGAAAGACTTTGACAACCAAACTGCTTTGTTACTTGCTTCCTCACATGGACATATACAGTGTGTCAAATTCATTCTTCGCCAACCAACTGTTGACATTCATGCTAAAGACAGATGGCGATCTACAGCTCTCACTGAGGCCATCAAGCACGGCCACGATCGAATTGCGCAGTGTCTAATTCGACATGGAAGCAGTTGGAGTAAAGATGGAGCGGGAGATATTCTTTGTTCTGCTGTTGCTAAGAATGACATGGAAGAAATTCACAGACTTGTGTCAATGGGAGTAGATGTCAATGCCCCAAATTCAGAGGGAAGTTACGCCATTCACACGGCTTCAAAGCTTGGTAGTCGTGTTGTTGTACAATACTTGATTGACCAACGAGCTGATATCAACACCATTGACTCGAGTGGAAATTCACCGCTTAACTACTCTGACATGCACGAGCATCGCGCCGTCACTCAGTTACTCGAGGGACTGGGCGCTAGACGCGTTTCCCGCCATTATAATATTCAAGAAATCTGTGAAGTTGCAACAACAGGAAATCTACAGATGTTACGTCACATGGTCCACAATGGCGCTTCTGTTTGCTACAGAGATGTAAACCACAGAACTCCTCTCCACGTGAGTGCTGCTGAAGGACACCTTGATTTGGTCAAGTTTTTAGTGTTACAGCCAGGAATAGATGTGAATGCAGAAGATAAACACAGCTTTACTCCACTTCTTGATTCCATTTTCAACAAACATCACGATGTAGCAGAGTTTCTCAAGTCCCATGGAGCTACAATCAATGAATGCAAATTAGCATCACTCGTGACTGAAATGGCGCGAACTGGTGACGTTAGGAACCTAAAGCGCATGCTCAGATGGATAGGTCACGTGGATATATATGATTTTGATGGCAACACTGCGCTTCATGTGGCTGCAGTCAGTGGTAGAGATGATGTAGTTGGTATGTTGTTAAAAGAGGGAGCAGATGGAAGTTTATTGAATCGATGTAACAAAACTCCACTAGAGCTTGCTTGCAGCTTCCACCATCCATTGGTAGAAAAGGAATTGAGAAAACATCTTAAAATAAATACACACACACAAGACAAAGTTTCAACAGAAAATGAAGAAGATACTACTTCAACATCCTGCTATCGCAGAAAGTCCAGACTGCCAAAAAGAAATTTTAAAACTCAGCCATCGACGTACCACTACCAATCACAAGACTCATGGTCCTCTACAGACCTGTCAGTTGAAGCAAGAAAGAACCTTGAATCTAGGAGAGATGAAACACTACCACAAACTTTATCAATGGGTAGTGTACAAAACAACACCGATAAGACTCCTATTGGTCCATCGTTCCTTCGTGTAATGCCTGTGTCACAATTATCGCTGCAAACAAGAGAACTGACAGGTGGTCAACCAGATTATGTTTGA

Transcript

gene10117.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BLG4	Ammonium transporter 1 OS=Dictyostelium discoideum OX=44689 GN=amtA PE=1 SV=1
O26757	Putative ammonium transporter MTH_661 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=MTH_661 PE=3 SV=1
O94925	Glutaminase kidney isoform, mitochondrial OS=Homo sapiens OX=9606 GN=GLS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005993 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR045319 all species →	Family	Potassium channel KAT/AKT	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45743 all species →	POTASSIUM CHANNEL AKT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03320	amt, AMT, MEP; ammonium transporter, Amt family	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.