Gene detail

Detailed information of gene10272.t1 in Actinoscyphia liui

Genomic Location: chr3:18935388...18940400
NR annotation: XP_028515181.1, uncharacterized protein LOC114575136 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene10272.t1

ATGGAAACTTTGGACGAAACGCAGTGCGAAGCTGCTGCAAACTGCACTCGAAGCACTGCGATGGATTCCCAGATTCCCAGCAAAAATAGCCACGGAGAAAGTGTTAGGCTTACAAATGTATCCACTCACCCGAAAATATGTGATGGAAAAAACACGGTCGAAACTGATGTCGACAAAAGAAGCATAGCCAAGGAGAATATTGCTGCAGATCTGCGAGCTTCTCTGGAAGAGTTGAGGAAATTCCGCGAAGAGTTGGACGATCTTGGTAGAAAAATCATTGAAGCAAAAATAAAATTTAACAAGGAAGTCTCTACCATTATTAAAAACAATATCGGACAAGTACTTCCTCATGGAGGTCGTTCAGAAAACCATGAGGCAGAGTTGCATTTAAGTGAAGTGAAGATTCAGAAATGGACAATTGCAATGTCGAATGATTCCTTAGCGCTTGAGAGGGTCAAGCACATTTGCAGTGCGCTCGATGGCGACGCCATTTACCATTATGAAAACATTGATGACTTCGATGATACAGATGAAGGCCCACATCAAGTGAATAGCAAAGGCAAGCCAATCAGCTGCAAGATTTTTGTCGATGAGAATAGAGTTTATCAACCAGCAACATTTTGCAGAAGCAAGCGAAAGGAAGGGAAGCTGGACAATCAGAGGCGCTACATCTTAGGAGAAATAGCTCGAGGCAAGAATATCATCAGATGTTATCAGAAAGAGTGTAGAAACTTCTATGATCCTTGGGATGTTGTTCGTTGTGTTGACACCAAAGACGCTTTCCTCTGGTATGACACGGTTGCCTTTGACCCTTTTAACAAGAAACATTCAACCAAGGAAAGCTTGAAAACAAAACCTCTCACTTCACGCAAAGAAGCACTCGAAGATGAAGCATCCCAAGAAGCTGAGCCACTTGAGCCTCGCGACCGTCAGCATAAAAGGAAATGGTGGAGGAGGAAAAAGACGACCTCCAAAGACAAAGACGACACGCAACAGCTCACCGAGTCAAACCCTTACGACATTTATTTAGAGGATAACTACGAGGTAAAGCAACACAAATATGAATGCGATACTTGCTTAGAAGGATTTGATGAAGATCCAGACGAAGGCTCCACAAATTGTGGACACTACAACTGCAAATCTTGCCTCAAAAGGTACTTCGAGGAACAAGTCACGAATATGTTGACAACAATCGAATGTCCAAGGCTTGATTGCAGTGAGGAGTTCTGCCCTAAGTTTATCATACGCTTGCTCAACGTCGATCTCGCATATTCGTACATAAAGATTTTCAAAATGAGAAGACAGTTGGAGATGAGAGTCAAGGCAGAGAGGTGTTCGTCTGAAAAAAGTTGCCAAGGCGGACCTCACTGTACCAAGGAGAACTGTGTCTGTAAAAATGGCACACAAGACACTGAAAGTTGGATAGAAAAGTCCAACAAATTCGGTCCCTGTCCTTCATGTAATACCCTCATTGAGAAAATCAAAGACGGCAGGTGTAACTTCGTTATTTGCAGTTTTTGTGGCACCGAGTTTTGTTGGGTTTGCAAGAAGTCTGGCGACGATAAATTTCACATGTTCGAATGCCCCCTCTATGGTGAGAGGAAGTTCAGTAAAAAGAGAAAACTGCTGAACTATATCGCTTTTGGTGCTGGGATAACGATTGGAACTCCGCTGGTCAGCGGTATTGTTTTAGGGACTGGTGCTGTGTTCATGGGGTCTGTATTGACAGCAGGAGCTCTAAGTCCCCCCATCTACTTGGCCAAGGACTCGCACAATTACCATAAACAACAACACAGCTCGACGCTTACCAGAACGTTATCCACGGTGGCGGCGGGAACCCTGGGTGTGCTTGGGCTACCATTCTTATCATTATGGGGTGTTTACAGAACCTTCAAAAACGCCTCGAAGTGCACGTGGGATGCTTTGGATAATTGGTTGGACGAAAACGTGGAGATTGAGGACCACATTCCTGTATGGACTCCACCATCGAGTAATCAAGCTAGTCCAAACACCTCAACTTCACCGCAACTCTCAGAAAATTCAACGTCGTCAGATTGA

Transcript

gene10272.t1

TTGCCGATACCAAGACAACTTCAAGAATATTTAACGGATCAAACACTATGGGTTCTGCCAAGCAAAGAAGCAGATAATGGGTGATCGACGTTTCCCGACCAAAATAGTAATTTCAATACATCATTAGGATCATTGGTCGCATCAGAAGTGACGTCACACCGTGATGATGACGTAACAATGGAAACTTTGGACGAAACGCAGTGCGAAGCTGCTGCAAACTGCACTCGAAGCACTGCGATGGATTCCCAGATTCCCAGCAAAAATAGCCACGGAGAAAGTGTTAGGCTTACAAATGTATCCACTCACCCGAAAATATGTGATGGAAAAAACACGGTCGAAACTGATGTCGACAAAAGAAGCATAGCCAAGGAGAATATTGCTGCAGATCTGCGAGCTTCTCTGGAAGAGTTGAGGAAATTCCGCGAAGAGTTGGACGATCTTGGTAGAAAAATCATTGAAGCAAAAATAAAATTTAACAAGGAAGTCTCTACCATTATTAAAAACAATATCGGACAAGTACTTCCTCATGGAGGTCGTTCAGAAAACCATGAGGCAGAGTTGCATTTAAGTGAAGTGAAGATTCAGAAATGGACAATTGCAATGTCGAATGATTCCTTAGCGCTTGAGAGGGTCAAGCACATTTGCAGTGCGCTCGATGGCGACGCCATTTACCATTATGAAAACATTGATGACTTCGATGATACAGATGAAGGCCCACATCAAGTGAATAGCAAAGGCAAGCCAATCAGCTGCAAGATTTTTGTCGATGAGAATAGAGTTTATCAACCAGCAACATTTTGCAGAAGCAAGCGAAAGGAAGGGAAGCTGGACAATCAGAGGCGCTACATCTTAGGAGAAATAGCTCGAGGCAAGAATATCATCAGATGTTATCAGAAAGAGTGTAGAAACTTCTATGATCCTTGGGATGTTGTTCGTTGTGTTGACACCAAAGACGCTTTCCTCTGGTATGACACGGTTGCCTTTGACCCTTTTAACAAGAAACATTCAACCAAGGAAAGCTTGAAAACAAAACCTCTCACTTCACGCAAAGAAGCACTCGAAGATGAAGCATCCCAAGAAGCTGAGCCACTTGAGCCTCGCGACCGTCAGCATAAAAGGAAATGGTGGAGGAGGAAAAAGACGACCTCCAAAGACAAAGACGACACGCAACAGCTCACCGAGTCAAACCCTTACGACATTTATTTAGAGGATAACTACGAGGTAAAGCAACACAAATATGAATGCGATACTTGCTTAGAAGGATTTGATGAAGATCCAGACGAAGGCTCCACAAATTGTGGACACTACAACTGCAAATCTTGCCTCAAAAGGTACTTCGAGGAACAAGTCACGAATATGTTGACAACAATCGAATGTCCAAGGCTTGATTGCAGTGAGGAGTTCTGCCCTAAGTTTATCATACGCTTGCTCAACGTCGATCTCGCATATTCGTACATAAAGATTTTCAAAATGAGAAGACAGTTGGAGATGAGAGTCAAGGCAGAGAGGTGTTCGTCTGAAAAAAGTTGCCAAGGCGGACCTCACTGTACCAAGGAGAACTGTGTCTGTAAAAATGGCACACAAGACACTGAAAGTTGGATAGAAAAGTCCAACAAATTCGGTCCCTGTCCTTCATGTAATACCCTCATTGAGAAAATCAAAGACGGCAGGTGTAACTTCGTTATTTGCAGTTTTTGTGGCACCGAGTTTTGTTGGGTTTGCAAGAAGTCTGGCGACGATAAATTTCACATGTTCGAATGCCCCCTCTATGGTGAGAGGAAGTTCAGTAAAAAGAGAAAACTGCTGAACTATATCGCTTTTGGTGCTGGGATAACGATTGGAACTCCGCTGGTCAGCGGTATTGTTTTAGGGACTGGTGCTGTGTTCATGGGGTCTGTATTGACAGCAGGAGCTCTAAGTCCCCCCATCTACTTGGCCAAGGACTCGCACAATTACCATAAACAACAACACAGCTCGACGCTTACCAGAACGTTATCCACGGTGGCGGCGGGAACCCTGGGTGTGCTTGGGCTACCATTCTTATCATTATGGGGTGTTTACAGAACCTTCAAAAACGCCTCGAAGTGCACGTGGGATGCTTTGGATAATTGGTTGGACGAAAACGTGGAGATTGAGGACCACATTCCTGTATGGACTCCACCATCGAGTAATCAAGCTAGTCCAAACACCTCAACTTCACCGCAACTCTCAGAAAATTCAACGTCGTCAGATTGACATTATTTTTGCACTTTATTGGAATTTGAAACTGATTGTTGTTATATATTGTTTTTACAAATGTTTCGTATTAAAAGTACTATTCAGCTCGATGTAGATTAACGCCGGGATCCTAAAACGATTCTAAAACAAAATTGAATCTCCATCCTTCCCTCATGTCGATTGTAGGTTTTATCGAAAAATATTTCTCTTCTCTCCTCCCCCCGTCCTACTCTGGCGGATTAGGAAACAAGAAGGGAGAGGGGCCCTAAATGAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0019579 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene10272.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.