Gene detail

Detailed information of gene10294.t1 in Actinoscyphia liui

Genomic Location: chr3:19315204...19320268
NR annotation: XP_020908300.1, cAMP-dependent protein kinase type I-alpha regulatory subunit isoform X1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene10294.t1

ATGGCGTCCTCGAAACGACAAGACGGAGATGCAGAAGCGTTGAGGCAATGCGAAATTTACGTGGAAAAACACAATATCCAAGGCGTTCTAAAAGACTGCATCGTTCAGTTGTGTATAGCAAAGCCAGAAAATCCTTACAAATTCTTTAGAGAATATTTCGAGAGATTGGAAAAGGAGCATGAAGATAGGAAAGCCGATGCGTCAGGACTTGAATCCGAACCCGAGCAAAGGACCGATCGAGAGGAACAGCCTCCTTCAATTGCAAAACCATTCCAGCGACAGCGACGAGGAGCAGTTAGTGCCGCTCCTATAACCGAAGATGAGGCAACATCATACGTTAAAAAGGTCGTGCCGAAAGATTATAAAACAATGGCTGCTCTCTCCAAAGCTATTACAAGGAACATTCTCTTCTCACATCTGGACGAGAATGAGCGAAGCGATATTTTCGATGCTATGTGCCTCGTGAAACACAGCGCAGGGGAGCTCATCATCCAACAAGGCGACGAAGGAGACAACTTTTACATCATTGACAGTGGCGAAGTCGAGGTACTGGTCAACAATGCTGTAGTCAATGCTATTAGTGAAGGTGCTAGTTTTGGAGAGTTAGCATTGATCTATGGTACTCCAAGAGCTGCAACCATCAAGGCTAAGACTGATGTCAAGCTATGGGCTATTGATCGTGTGACCTACCGCCGAATTCTCATGGGTAGTCAGATCCGTAAGAGACGCATGTATGAACAATTCCTGGAAAAGGTCAGCATTCTGGAGTCACTTGACAAGTGGGAGAGGTTGACTGTTGCTGATGCTCTTGAGCCAGTCCAGTTCCAAGATGGAGAGGAAGTGGTTGTACAGGGTGAACATGGAGATGAGTTTTACATTATTGTTGAAGGGTGTGCTGTGGTACTCCAGAGACGAACACCCAATGAAGAATTTATTGAAGTCAGCCGACTAGGGCCTTCAGATTACTTTGGTGAAATAGCCTTGGTGCTCAATCGACCTCGAGCAGCTACAGTTACGGCAAGGGGTCTGCTCAAGTGTGTCAAGCTGGACAGACAGCGGTTTGAGCGTGTAATGGGTCCATGTAACGACATCCTAAAGCGAAATATCCAGCAGTACAACAGCTTTGTTTCTCTGGTGGTGTAAACCCCATCAGCGAAGTAACCATTGTACACAGAAAAGAGAAATCATTATTATTCCATCTGAGATATTAGCATACATGTGTATAAAGAAGCTCTTATTGTTTTATGACTGTTATGTTTTCCCAGCCAAATTGTTGCCATGTGTATATTCGATACAGGGTCAGGGAGCTGAGTATAAAACATCAAGTCAATAATTAGATTTTGCTCAAGTCCTGTACATACATAGATATTGGATACATTATGGTACAAGGATAGTATAGTTGTGCTTTTAATAATATCTGATAAGACATTATTTTTAAGTACCTGTTAGCTTCCATGTAGAAAGTATCTATGATCTGACTTGGTGAGTCTGAATACTCTCATTTTTACCTCAGAATGTGATTCAATTTCAAGAAAAAAATTCTTGAAGTTTTTGAGATCAGAATTTTGATGACGTCAGACATGGGGAAGCAAAGCTTGCAACTAAATAACTTACCTTGTAGTCACAGCAAAAGATACTCTTAAACCTGATTACTTCGTCCAAAGCAAACAAATATTAAGAATTTCAATTTGAGACATTGTACGCTACCAGAGAAGAATGCTTCCCCATGTATGACATCATCAAAATTCCGCTCTCAAAAACTTCAATATTTTTTTTCTCAAAATTGAATCACATTTTGATGTAAAAACCTCAGAAATCGTTATCAGAAAGATCAAAATAATCATATAAAAATTGGTTATTTTTTGCCTTCAGTTTCCCTTTAAAGATTTTATTAATATCCTTAGTGAGCCTACCAAAGTCTTTCCAAGTCTTTCAGTGATTAGCTGATTAGGGGCCATCTTGGATTTGTAACAAATATTGTTTAAATAGTATTTAATTATTGGTAAACAAATTTATAACAGTTCCTCAGCGACCAGATAAGTTTTAATTGACTACACTCAGTGATCAGACCACCCTACTAGGCAGTGTTGTGTATAAAAGGTATAAATATATATGTCCTTGGTCATTTAACACGTACATGTATATGTTTGGTAGGCAAAGGGTTAATGTGGCCGTGTGCACCACTTGTGAACAAATGCTATCCATTGAAATACATGGTATGGTTTTTATTACAAGGTCAGTGTTTCTTGGTTAGAAGATAGTATTCATATACAGCTACACTATTCCATTACTTTGAGGGGTGGTAAGTGGTACATTTTGAGACTTGCTAAGATGCCATTGAAGCATATTTTCAGCCGAAAACATACAGAGACCATTCACTGCCCCTACTTTTACCAGACTAAACTTGTATGCTATGGTAACCAGTTTGTTTTTGAAGATTAAAAGTATGAAGATCCATGTATTTGATAGTAGTCATTACTTTGTAACATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00514	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Bos taurus OX=9913 GN=PRKAR1A PE=1 SV=2
P10644	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens OX=9606 GN=PRKAR1A PE=1 SV=1
Q5REL1	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Pongo abelii OX=9601 GN=PRKAR1A PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005610 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF02197 all species →	RIIa	Regulatory subunit of type II PKA R-subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018488 all species →	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR050503 all species →	Family	cAMP-dependent kinase regulatory chain	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR003117 all species →	Domain	cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain	Interproscan
IPR012198 all species →	Family	cAMP-dependent protein kinase regulatory subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11635 all species →	CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001932 all species →	Biological Process	regulation of protein phosphorylation	Interproscan
GO:0005952 all species →	Cellular Component	cAMP-dependent protein kinase complex	Interproscan
GO:0008603 all species →	Molecular Function	cAMP-dependent protein kinase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04739	PRKAR; cAMP-dependent protein kinase regulator	-	Insulin signaling pathway	ko04910	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.