Gene detail

Detailed information of gene10374.t1 in Actinoscyphia liui

Genomic Location: chr3:20546443...20555986
NR annotation: XP_020901568.1, pyruvate kinase PKM [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene10374.t1

TTCGCTTTCCCTTATTCTGTACACAGTTCTGTAACCACATTAAGAAAGCAAAAATACTCCTTGCAGCTTTATACAAACCAGAGGTAAACCATGTCAGCTAAAGGTGCCAGAGAAGAGTACCTTCATGATATGGACAGGCGTCAATCAAAGTGGAATGGGTCTCGTGCATCATCTTATCTTGAGTACCTTTCTGAGCTGGATATTGACAGAGAAGCAGCAACCATTCGTAATTCTGGAATAATCTGCACTATTGGTCCAGCCTCAAGATCAGTGGAAACATGTATAAAGCTGATTGAAAATGGAATGAACATTGCACGTTTGAACTTCTCGCATGGGGACCATGATTACCATAGAGAAACCATAGAAAATGTCAGACGAGCTGCACTGATTGAATGGCCTCATGCTGTAGCTATTGCACTGGACACCAAGGGACCTGAAATCAGGACAGGACTTCTTAAAGGGGGAGGATCAGCAGAGATTTCATTGCTCAAAGGACAGAAACTAAGAGTGACTACAGACAAGGCCATGTATAACCAGTGTGATTCTCAGACAATTTATGTGGACTATGGGAATATTGTCAAAGTAGTACCTATTGATGGCATTGTATATGTAGATGATGGTCTTATTTCTCTCAAGGTTTTAGAGAAAGGACCAAATTTTCTGATCACTGAAGTCCAAAATGATGCATCTCTGGGAAGCAAGAAAGGTGTTAACCTGCCTAACTGTGAAGTGGACTTACCTGCAGTCTCAGACCAGGACAAGAGAGATATTGCCTTTGCATTGGAACAAAATCTTGACATGATCTTCGCATCATTTATCCGCAAACCCCAAGACATCCATGAAATTCGTAAGATTCTTGGAGACAAAGCAGATTCTATGAAGATCGTTGCCAAGATCGAGAACCACGAAGGTGTCAAGAGGTTTAACGACATTGTTGCAGTGGCTGATGGGATTATGGTTGCCCGAGGAGACTTGGGAATAGAAATTCCCCCTGAGAAGGTTTTCTTGGCTCAGAAGATGATGATAAGTCGTTGCAACAAACTTGGAAAACCTGTGATATGTGCAACCCAGATGTTGGAGAGTATGGTGGTCAATCCACGCCCAACGCGAGCTGAAACATCTGATGTGGCAAATGCTATTCTTGACGGTGCTGATTGTGTTATGCTCTCAGGGGAGACAGCTAAAGGGCGTTACCCAATCAACGCCGTACGCATGATGCACAAGATTTGTCGCGAAGCTGAAGCAGCCATTTTTAGCAAGCAGCTCTTTGACGAACTGCGTCACTCCATGGACAGGGCAGCAGATACGCAAGAGGCTACAGCTATTGCTGCTGTTGCTGCTACCTACCAGTGTAATGCTGATGCTATTGTTTGCCTTACCCATACAGGAAGGACCGCTCAAATCACATCCCGTTTCCGCCCACGCTGCCCCATCGTGGTTGTGACCCGTGACCCTAAGGTTGCCCGTCAGATGCATTTATGGCGAGGATGTTTCCCCATAGTGTATGACAAGGCTCCACTCCAAAACGTCCTGGAAGAGCACGACGAGCGCCTGGACTTCGCACTCAACATGGGGAAGACTATGGGTTTCTTGAAGGAAGGCAGCGTGTTCGTGTTTATCTCTGGGTGGAAAGCTGGAGCCACTCACACTAACACGATTCGTATTCTCACCATTGCCAAAGATAAAATCCAGATTGCGCGCAGTTTGTCTGAAACCGCGCACCCTACCGGTGTCAAAGTGACTGAGTGAGTTCAGCTGCGTAGTCCATCCACTGTGCTGCAGCTCGAAGTTTGACCGCCCTTAATGTATTCTGTTGGTGATGAGAGGCGTTGATTGAATTAATCACATCACGATTGGAGTAAAAATTAACTTTGGCTGTGACCCGTGATTTGCATGATTAACATGACCTTTAGCTCTACCTGTATTCAAATGCCCATTATTCATGATTGGTACCTCCCTTCACCAGCCTGATAGAGGTCCACACCTAGAATTTTTGGCTTTTCTCGAATCACAAATCGAATTCAGGTTGAATCACGGATCACAGCTTACCCCTTCACCACCCTGATTGGAGTCACTTTTATGCGAAACCGTGCAGCTTTATTGGTTTGTGATCATTATTATTATCGTGTGTCACACAACTTTAAAAATACAATTCATTAGTTACAATTCAGACGGCACTCTGGTGCAAGATTGCTTGTTTTGTTGCGCGTATAACCACAGGTAGCCCAATCTCACTGTTTGTGGCTATTTACTAGAGATATATGTGACTAAACGAAACCTGGAATATAATCGTTGAATCTTAATAAAATCCAATAAAACTTACATGGTGTCTTCTTTGTGTACTTCGGTTATCCTCCTGCTGAGTTTCAGCGAATTTCGTTAAGTTTTAGCTGCTTTTAGCTCATAAAAGGAGTGGCGATCGAGGGGAAACCAGTTAAAATTTAACGAAATTCGCTGAAACACGAAGTACATAAAGAAGACACCATGTACGTTTTGTATAAATATAACAGAAATAGAATGTTTATTTTGCTTATGCAACATTGCGAGCAAGGCACCAGATGCCACACCCTTAGCAAGAATTCCATGCGCTTGTTATTACGTCGGGTCTTTTTAAAGTAAAACATTATAGCTATATAAAGCAACCAATAGAGTGCATGCCAAAAAAGTGTGAAACAACTACTAGCTTTTTAGCGCGTAGTAGTATTTCGTTATCAACTAATAGTTATCAACTTACTAAGAATTAACCCAGGCGTAAAACAAAGACACAAAGAAATCAAAAGACACAAAGAAATACACAAACGCGTTATAAAGAATGTTGCATGTTATTTATTTCTTTGTCTTTGAATTTCTTTGTGTCTTTGTTTTACGCCTGGGTTAATTCTTAGTTAGTTGATAACTATTAGTTGATAACTAAATACTATTACGCCCTAGACAGTAAAAATTGTTTCACACTTTTCTGGCATGCACTCTATCGGTGCACGAGAAAGTCATTCTAACGATAACTTTACAATTTGTATATCATTCATTTAAATACTACATTATTATAGTTTAAACATTTAAATACTATAGTGTTCAAATGACCAACAAAGTTAACGATAAATTGACAAAATGGTCGTTTATAGGGGATGGTGCCTAATAGAGGAAGAAAATTGGTATTGATATTTTAGATATTTAAGGTTTATAAGAATCACCCAGATACATAAAGACGTTATAAGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14618	Pyruvate kinase PKM OS=Homo sapiens OX=9606 GN=PKM PE=1 SV=4
Q92122	Pyruvate kinase PKM OS=Xenopus laevis OX=8355 GN=pkm PE=2 SV=1
P52480	Pyruvate kinase PKM OS=Mus musculus OX=10090 GN=Pkm PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003990 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00224 all species →	PK	Pyruvate kinase, barrel domain	Domain	Interproscan
PF02887 all species →	PK_C	Pyruvate kinase, alpha/beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001697 all species →	Family	Pyruvate kinase	Interproscan
IPR015806 all species →	Homologous_superfamily	Pyruvate kinase, insert domain superfamily	Interproscan
IPR011037 all species →	Homologous_superfamily	Pyruvate kinase-like, insert domain superfamily	Interproscan
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR015793 all species →	Domain	Pyruvate kinase, barrel	Interproscan
IPR036918 all species →	Homologous_superfamily	Pyruvate kinase, C-terminal domain superfamily	Interproscan
IPR015795 all species →	Domain	Pyruvate kinase, C-terminal	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11817 all species →	PYRUVATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0004743 all species →	Molecular Function	pyruvate kinase activity	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan
GO:0030955 all species →	Molecular Function	potassium ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00873	PK, pyk; pyruvate kinase	EC:2.7.1.40	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.