Gene detail

Detailed information of gene10587.t1 in Actinoscyphia liui

Genomic Location: chr3:23444240...23452504
NR annotation: XP_020901414.1, axin-1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene10587.t1

ATGGATTCGACAATGAGTGTGGACTGTGTTCCAAAGAGACTTGGAAATTCTCAGGGATCACTGGAGCCTCGATCTACACGTGAAATCGAGTCGGTAAATAGTGATTTGTGTTGTAGTATGCCTCGACCACCTCCAACGGGTGAAGACTCTACTGAGGATGTTCGATCGAAAGAAGGCCTTGCTGGCCCAACTAAGGGAGACTCTTACGAATGCCCAAGCCCTAGACTGACACCAAGACGCTGTTCTGCAAAGGAATTACCGGCAAGTTGTGGAGCTTCTCACACCACTGAAGAAGATAAGTTGGCACCACTTGGATTTGAACCCGAAGGAGAAGCCGTTTCGCCGTCTACTTTTCGTGAACCTAGTGGCAGTTGCTTTACAGATATGTTGTGCGATGCAGAAGCATCTCATGTATTTTATCAGTATCTACGGAGAGTAAATTATCATGGACTTATGGATTTCTGTCGGGCTTGTGACGACTTCAGAGGTATGGTCCCAACGTCCCCCCAAACACTGTCCACTGCTAAATCAATCTTCCAGCAGTATATTCTCACACGAGAAACATGCGAACATTTGGGAATTACAGCATCTACTAGAGCAAAAATAGCCGAACTCATCAGTGTTCAACCTATAGATCCTGTGCTCTTTGAGGAGGCTTATTGTGAGGTTGTTGCAAACATGAAAAATTTACACTACAAAACATTTTTGAACTCGAGCTTCTTCAAAGAGTTCGCCGAAACTCGTAGCGAATCACCGAAGTTGTTGGGTAATCAGACTAGTTATAACAGAAGATTTCAAGGTTATCTGCCAACTTTACCCGAGGAAAAAGTTCTCGGGTTCGGCGATGAAATCGAGGAATTTGAATTCGATAAACAATGCAAAACTGCAAAACCATCGCCATACTGTGGAGGTTCTAATTCTACATCTGACGAGAAAAACGCAAGAAATTTACTTCATGTTCCAATAAAAGATGTCAGCTCACCGTATTACTATCCAAATGCACCACTAGCATCAATAACTGAATCCGAAAGCATCTCGAGTGATGCGCTTACAGATGATACTCTATCCATGACAACTGATACCAGCGATGGGCATTCAAGATGTAGTGGAGGTAGAAGAACACACAGAAGTAGAAGTAGCGCTCCACATTCTCGTTTTCCATTTATTCCACGCACACACAGAATGCCTAAGGAAGCCAAACATCCCATGTCTCCTGATGAGTTTGCCAAAATCTTGATAGAAAAGCTTGAAAAAGTTGTTGCTGAAAGACAACTTCAAGAACGCGAAGCCTTAAACCTCTCTCAGTCTGTAGATGCTGAAAGACCAGGTAGCAGTCTATCCAAGAAGTCGATATTACAGGAAGCTATTGAAAACAAAGAAAGGAGAGACAGGATTCCATTGAGCACAATGGTCCATATACCAGCTCAAGATGATGCATCGTCAATAAGTACATCAAACCACTCATCGTCAAAAAGTGCAAGTGCACGTGCAACTGCTGGATCAGGAGTCCAAAATAGCAGCAGCAGTGAGAGTACGCATAGAAAATATCGCAGTAGTCGACATACCACAAAGTCGTCATCAAAGCATGAGAGTGAATTAGCAAATAAACCGAATGAACAATTACCTGCAAATATGTATAAAGAACCTAAAATCACAAAAGACACTAACTTATCCAATGACGATATCCCAATCTTGACTTTAAATCATCATCGGATCCAAGAGTGGATGGCAACCGGTGAGGAAGAATTACGAAAGCAAAAATCAAAACCTCATCAGTCAAAAAGTCGACAGTCTTCGAGTAGCCGTGGTGATAGTAATTACACCGCTAACCATCAACCAAAGCAACCGATAGCACAGGATCCAATGATGCCACTGCTCCATGGACCGGAAGCCACTACTGTGCTTGGGGAAGTGCGAAGACGGCTTATGGAAACCAAAGAGCAGGATCGAAAGAAACATAGTCAACGGCACAGATCACGGAACAGCGTTGATGACTCTAGCGACCAATCTTCATATTATGGCAAAGAAAGCACAACAGATGGAGTATCAAGTTGTAGCCAGTCGTTATTATCGTATGACCTAAATCAGCATCAATCGTATTCATCAATTCCATCATCGGCATCAAACATAGGAAATGATAGCAAAAGTCGATCGGATAGTGGTATTGGTGGTGGTGTCCGGAAGAAGGAGAAACACAACGCTACTACAGTAATTTACTGGCTATGGGGAGAGCCCATTGCATATCGCACATCTTTACCAGGGAAACATATCACTTTGGGACAGTTTAAGACTCAGCTAATTCCACGAAAGGGAGAATTTCGATATTTTTTCAAGACCAAAACTGATGATCATGATGCGGACGTTGTATACGAAGAAGTAAGAGAAGACGAAATGGGATTACCAATGTTTGATGGCAAAATTGTTGGCAAAGTAGAAAAAGTGGACTAA

Transcript

gene10587.t1

GTTTGGTGAGCAGTGTGTATTCCATGCCGGTCGAGCCCGAGCATTTGCCTTCGAGATGGATTCGACAATGAGTGTGGACTGTGTTCCAAAGAGACTTGGAAATTCTCAGGGATCACTGGAGCCTCGATCTACACGTGAAATCGAGTCGGTAAATAGTGATTTGTGTTGTAGTATGCCTCGACCACCTCCAACGGGTGAAGACTCTACTGAGGATGTTCGATCGAAAGAAGGCCTTGCTGGCCCAACTAAGGGAGACTCTTACGAATGCCCAAGCCCTAGACTGACACCAAGACGCTGTTCTGCAAAGGAATTACCGGCAAGTTGTGGAGCTTCTCACACCACTGAAGAAGATAAGTTGGCACCACTTGGATTTGAACCCGAAGGAGAAGCCGTTTCGCCGTCTACTTTTCGTGAACCTAGTGGCAGTTGCTTTACAGATATGTTGTGCGATGCAGAAGCATCTCATGTATTTTATCAGTATCTACGGAGAGTAAATTATCATGGACTTATGGATTTCTGTCGGGCTTGTGACGACTTCAGAGGTATGGTCCCAACGTCCCCCCAAACACTGTCCACTGCTAAATCAATCTTCCAGCAGTATATTCTCACACGAGAAACATGCGAACATTTGGGAATTACAGCATCTACTAGAGCAAAAATAGCCGAACTCATCAGTGTTCAACCTATAGATCCTGTGCTCTTTGAGGAGGCTTATTGTGAGGTTGTTGCAAACATGAAAAATTTACACTACAAAACATTTTTGAACTCGAGCTTCTTCAAAGAGTTCGCCGAAACTCGTAGCGAATCACCGAAGTTGTTGGGTAATCAGACTAGTTATAACAGAAGATTTCAAGGTTATCTGCCAACTTTACCCGAGGAAAAAGTTCTCGGGTTCGGCGATGAAATCGAGGAATTTGAATTCGATAAACAATGCAAAACTGCAAAACCATCGCCATACTGTGGAGGTTCTAATTCTACATCTGACGAGAAAAACGCAAGAAATTTACTTCATGTTCCAATAAAAGATGTCAGCTCACCGTATTACTATCCAAATGCACCACTAGCATCAATAACTGAATCCGAAAGCATCTCGAGTGATGCGCTTACAGATGATACTCTATCCATGACAACTGATACCAGCGATGGGCATTCAAGATGTAGTGGAGGTAGAAGAACACACAGAAGTAGAAGTAGCGCTCCACATTCTCGTTTTCCATTTATTCCACGCACACACAGAATGCCTAAGGAAGCCAAACATCCCATGTCTCCTGATGAGTTTGCCAAAATCTTGATAGAAAAGCTTGAAAAAGTTGTTGCTGAAAGACAACTTCAAGAACGCGAAGCCTTAAACCTCTCTCAGTCTGTAGATGCTGAAAGACCAGGTAGCAGTCTATCCAAGAAGTCGATATTACAGGAAGCTATTGAAAACAAAGAAAGGAGAGACAGGATTCCATTGAGCACAATGGTCCATATACCAGCTCAAGATGATGCATCGTCAATAAGTACATCAAACCACTCATCGTCAAAAAGTGCAAGTGCACGTGCAACTGCTGGATCAGGAGTCCAAAATAGCAGCAGCAGTGAGAGTACGCATAGAAAATATCGCAGTAGTCGACATACCACAAAGTCGTCATCAAAGCATGAGAGTGAATTAGCAAATAAACCGAATGAACAATTACCTGCAAATATGTATAAAGAACCTAAAATCACAAAAGACACTAACTTATCCAATGACGATATCCCAATCTTGACTTTAAATCATCATCGGATCCAAGAGTGGATGGCAACCGGTGAGGAAGAATTACGAAAGCAAAAATCAAAACCTCATCAGTCAAAAAGTCGACAGTCTTCGAGTAGCCGTGGTGATAGTAATTACACCGCTAACCATCAACCAAAGCAACCGATAGCACAGGATCCAATGATGCCACTGCTCCATGGACCGGAAGCCACTACTGTGCTTGGGGAAGTGCGAAGACGGCTTATGGAAACCAAAGAGCAGGATCGAAAGAAACATAGTCAACGGCACAGATCACGGAACAGCGTTGATGACTCTAGCGACCAATCTTCATATTATGGCAAAGAAAGCACAACAGATGGAGTATCAAGTTGTAGCCAGTCGTTATTATCGTATGACCTAAATCAGCATCAATCGTATTCATCAATTCCATCATCGGCATCAAACATAGGAAATGATAGCAAAAGTCGATCGGATAGTGGTATTGGTGGTGGTGTCCGGAAGAAGGAGAAACACAACGCTACTACAGTAATTTACTGGCTATGGGGAGAGCCCATTGCATATCGCACATCTTTACCAGGGAAACATATCACTTTGGGACAGTTTAAGACTCAGCTAATTCCACGAAAGGGAGAATTTCGATATTTTTTCAAGACCAAAACTGATGATCATGATGCGGACGTTGTATACGAAGAAGTAAGAGAAGACGAAATGGGATTACCAATGTTTGATGGCAAAATTGTTGGCAAAGTAGAAAAAGTGGACTAATAATGCCAATGAATATGAACAGAGTTTTTAATGGAGTTCTTGTTTTATTACTGAAATATTTTATGACTGAGAAAGGATTTATAATATTATTATCAATATGCAAGGTTTTCTAGGCCTTGTGTGCCAGAGAATTGGCTTTTATGTAAATAGCCTCATAATATATTTGTACTATAACATGATATGTTAATGTTGTAAAATTTTAAAGCTCCTTCAAATAAAAGTATTATTTTACAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9YGY0	Axin-1 OS=Xenopus laevis OX=8355 GN=axin1 PE=1 SV=1
O70239	Axin-1 OS=Rattus norvegicus OX=10116 GN=Axin1 PE=1 SV=3
O42400	Axin-1 OS=Gallus gallus OX=9031 GN=AXIN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006542 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan
PF00778 all species →	DIX	DIX domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR024066 all species →	Homologous_superfamily	RGS, subdomain 1/3	Interproscan
IPR001158 all species →	Domain	DIX domain	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR038207 all species →	Homologous_superfamily	DIX domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR043581 all species →	Family	Axin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46102 all species →	AXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0030877 all species →	Cellular Component	beta-catenin destruction complex	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0045860 all species →	Biological Process	positive regulation of protein kinase activity	Interproscan
GO:0048468 all species →	Biological Process	cell development	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02157	AXIN1; axin 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.