Gene detail

Detailed information of gene10724.t1 in Actinoscyphia liui

Genomic Location: chr3:24996541...24998388
NR annotation: XP_020899806.1, chromobox protein homolog 8 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14781	Chromobox protein homolog 2 OS=Homo sapiens OX=9606 GN=CBX2 PE=1 SV=2
P30658	Chromobox protein homolog 2 OS=Mus musculus OX=10090 GN=Cbx2 PE=1 SV=2
O95503	Chromobox protein homolog 6 OS=Homo sapiens OX=9606 GN=CBX6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009804 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF17218 all species →	CBX7_C	CBX family C-terminal motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR033773 all species →	Conserved_site	CBX family C-terminal motif	Interproscan
IPR052458 all species →	Family	Polycomb group PRC1-like complex component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46389 all species →	POLYCOMB GROUP PROTEIN PC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0035102 all species →	Cellular Component	PRC1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11455	CBX8, PC3; chromobox protein 8	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.