Gene detail

Detailed information of gene10953.t1 in Actinoscyphia liui

Genomic Location: chr3:28334252...28340248
NR annotation: XP_020898946.1, ephrin-B1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene10953.t1

AGGCTCTATACTATGGATATCTAACATTATGAATGTCCTGGCCCTTCTTTACATACTAGCTACTTGTTTATTAGGCGACTCGAAAGTCTATCGCTCCATAGTCTGGAGTCCAGAAAATCCAATTTTTAAGCAAACCAGGATCAAATGCATTCTCCCCACATCGAGGCTGTTCATCGTCTGCCCCAGTATTTCGTTCATCGTCGCGGACAGAGACGGGCTTGCAATCAAAGACAACCTTTATGAAAACCTGTGGTTTGTTAATCGACAAGCCTATGATAGCTGCCAGGTTAACCAGGAGGGGCGCCTGTTAAAAAGATGCAACACCCCCCTGACTCAGTCACGGTATAACTTCATGTTCATTGAAACGAATCCAATATCAGGAGGGCTTGAGTTTGACTTTGGGAAAGACTACTATATTATAGCGACGTCAAATGGAACAGAAAAGTCTCTCACAAACCGAGAAGGAGGACACTGCAAAACTCATGACATGAAGTTGAGGCTTCATATATGCAACGATTCCAAAGACCCGCATTGTCTAAACGAGGAAAACTGCCAGCACTTAGAGAGGAAACCTACCGCAAACCCGGTAGATCCATCGATTGACATCGAAACACCACTGCCTACCAGGGCAGCAACTACCAGGGCAGCAACTACGGACTGTAATATTACTAATACTACTAAACTTACAACACCATATGGGTCAGTACCGCCTAACAGTCGCCACTACTTCACGTCCATCGAGGTCTACAAACTTGGTATTGGCCTCTTGGTCTTGGTGACTATCATCTTCCTATCGACAACCATATACCTTGGGATTCGTTTTTACAGACTGGAAAAGATTCACGCAGATTGCATCGTAAACAAAAACGCACGTTTGACTCGAGCCAGTAATGGCTCCACCGTTGTCACATTCGACTCAGTGACGTTGATAACAGGGACAGAATCTGAAGCACCTGCCTGAGATAGACCCTTCTAGTTTGGGCGTATTGTTTCCCATTTCAGACCACGTGTCATTCCCTTGAGTATTAGATTCTTTGTTTGAGCTACATCCATATTAATGTCTCTTCTCAAGCGTTAACTCAGACTACTGAAAGATCTAGAAATAATACTAAAGATAATGACAAGTGATCTGAAATTGGAAAACATTACAGACAAAGTCAAAGGGTCTATTGATGCGATAAGCGAACAAAGAAGCTCTTGCATTGGTTTTTAAAGAACGGCAACTACAGATGTCAATTTAGGTCTGACCGATCCTAGGCTTTTGTGATTGGCGTGACCTCGACCCAAGGGGCGTTTGTTGGGGGCGAGATCACGCAGCTCACAAAAGCGGGGCTGGAAATCGAGCCTAGACCGATCCTCATCTGGCGAAATAAGCATCAGCACAGCACTATACTGTATTTTAGTGGAATTAATTGTGTTTATGTTCGCCAGTAAGTATCGGCTCAGTCTACACAAAAAATACTCGGTATAATATCTTAAGGGGAACTGGGCGTACCGTTCATTCGTAGTTAGATATTTATAGACTCGAAACTGATCTAAGTAAAATGGTTTTCATTTTCGTGACGCCTTCGTAAACCGATAGACGTCTTTCACTTAAAATATGAGAACACAGCTGCTTTCTGCAAATCGAGAATTTACAGACTTGCACACCCAAGGGAGAGAGCCTGCCAATGGCTTTAAACAGTGTATTTATCATCTACACTATTTCACAATTCATTTTCCTTTATCACAGAATGCGTACAACATTGCGAGTAATTGTTGCACAGTCTGCTACCTGTAACAAGAAATGTGCTACTTGCACATTATTCCGCGCAAAACCTGTCGAGTTTCACTCACTCACCATGCTGTTTCTCATTGCGCACCGAGCCACGTGTCGAGAGCAGTCGCCCAGTATCTTCTCCTCTGCTTTTGGCACAGGGATCCCATCAACTAAGTAAAAAGGGGATAAATTAGTACAGTGGAACCCCGCTTTACGGACACCCGCTTAATATGGACACCCGCTTATTGTGGACAACTGTCTTGTCCCGAAAAAATAAATGCTCATACATTTTCTCTTATATTAGCCTTCTTAATAAGGACACCCAGATAATACGGACACTTTTGAATGTCCTGACGGTGTCCGTATTAACGGGGTTCCACTGTATTGACATAGTAGATATTTTATTAAAGATGGCAAGATTAAATAAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00812	Ephrin	Ephrin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001799	Domain	Ephrin receptor-binding domain	Interproscan
IPR031328	Family	Ephrin	Interproscan
IPR008972	Homologous_superfamily	Cupredoxin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11304	EPHRIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0046875	Molecular Function	ephrin receptor binding	Interproscan
GO:0048013	Biological Process	ephrin receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05463	EFNB; ephrin-B	-	Cytokines and neuropeptides	ko04052	deepkoala