Gene detail

Detailed information of gene11142.t1 in Actinoscyphia liui

Genomic Location: chr3:30537145...30561829
NR annotation: XP_028513376.1, amyloid beta A4 precursor protein-binding family B member 1-interacting protein [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene11142.t1

ATGGCTCCTCAACCAATTCACATATTACAAATAAGTCATCCAGCTACCAAGATGGATGAAATAGTAGTTGAAAAGCCAGAGGAAATTGCAAGTAAGGACACCACACCAAGTGACAGTACAGAAGATATTGATGCTGATGAGGTGGATGTCGCTGCTTCAGAAGATGAGAATGATGATGATGACATTGACAGGATGTTAAATGAGCTGCAAGGCTTTCAGGAGGAACTGGAGCAGGAATCACAATATGCCTTTGACGATGAACTTTCTCCTTTTGTAGTGGCACCACTACCTTCCAAACCCTTAGATGAATTCAGATTTTCCATGTCAGCTATGGAAGATACGGGAGAAGTGGATTTGGATGCTTTACTAGAAGATCTATGTATCATGGAAAAAGACCTCAATTCGAACAACTCAAGCAACAACACGGACGCATTTGAAGATAATTCTTACTCGCCCAAGCCAAATTCGCCATTATCGCCAACAGTGAAGGTCCCAGCAGATGTACGTAGTCGCTTGGAAAGTGTTCAAGAAGAAAGCAAAGAATTAACTCTGGAAGAACAACAAGAAAAAATTAAAGCTGAGAAAATCAGAATCGCTTTAGAGAAACTTCGGGCTGCCAGAGTCAAAAAGCTTGTCGTCAAAGTGTTCAACGATGAAGATCCAACATCGAAAACGATTGCCATCGACCAGACTTGGACGTCGTGGGAAGTCAGCAAGAAAATGATGATTAAGAATGACGCAGAACCCGATCCCAACTGGGCGCTTGTAGAGAGGTTATCAGACCTTTGTATAGAGAGATGTTTAGAAGATCATGAGTCAGTAGTAGATATAGTGTCGTACTGGCCGTGGGAACACGAAAATCGAATTGTTATCACCAACAAGAGGGACAAGTATGCGTTATTCAGAAACCCACAGAACTATCTTCTTTCGAGCGATACGTCAGCTGATGCTGCTCAACTTGCAGAAAAAAGTAAAGACATATTATTGGAGGAACACTTTTCACCTGACGCGATGAGACTTCCAGAGTTAGACGGTGTGCTATACCTCAAAGAAGGAAAGAAAAGTTGGAAAAAACATTACTTTGTTCTCAGAGCTTCAGGCATTTACTACACGCCCAAAGGAAAAACTAAGGCTTCCAAGGATTTGGTTTGTTTGGTTAAATTTGAATACGTTTCAGTATATTTTGGAGGCGCTGCCTTCAAGAAGAAATTCAAGGCACCAACAGAGCATTGCTTTGTGTTAAAACATCCTGAATACCACGAAATCGACTCTAAAGCTATCAAATACTTCTGTGCAGAAGATCCTAAAACACTTCAGCGATGGTCAGTGTGTATACGATTAGCTAAGTATGGCTATAAGATGCTTGATGACTACGCTACGACGCAAGATGAAATGGACAGACTTGCGTTCTCTTTAGACAAAAACAGATTTCCAAAAGCATCGAGTTTTAGTGCAGGACAAAAACCCGAGTCCAACGCGGCTCCTCAGATATCAGACGCTCGCGACAAAGCAGTCAAAGCCAAAGCCCAGTCAGACAGACTTAAACTTGCCATTGGTACTAATAACCCAGGAGGAAGTCAAAGCTTTTCAGTTTCAAGAAAACTTTCATCAGAAACAAAACAGAAGAAGAAAAGTATCGGGAACTTGTTTTCGGACGCATGGAAAAAAGGGACTGAACCAGAAGACGAGTTCCAGTTTCATGAGCAAGTCTCCCCTGGTACACCATCGAGCACTGGCCCAGGCATGACTCCCAACACCTTGGAACCTAGATCATTCATCATTGATAACGATATCATTATGGACCACATAACGGAAGAACTTTCACCGCCCCCACAGTCTACGAATCATCTGGATGTTGCTCCCCCACCACCAACCCCACAGCCTACGAATCATCTGGATGTTGCTCCTCCCCCACCACCAACCCCACAACCTACGAATCATCTGGATGTTGCTTCCCCACCACCAACCCCACAGCCTACGAATCAACTGGACGTTGCTCCCACACCACCACCACCACCACCACCGCCCCCACAGTCTACGAATCAACTGGACGTTGCTCCCACACCACCATCACCACCACCACCCACACAGTCTACTAATCAACTGGATGTTGCTCCTCCTCCACCACCACCACCGCCGCCGCCTCCGAATCAACTGGACGTTGCTCCCACACCACCACCCCCACAGCCTCCGAATGAACTGGATTTTGCTCCCCCACCACCACCCCCAGCAAGTAAAACCAGCAGTCTAGAGCGACGAAACATGCACAACAGTGCTGACGATACAGCTCGTATTCCTTCACCAACGGAGGTCAAGAGTATGTTGGAGAGTCTACAATCGCCACTTCCTTCACTATTACCGCATAAAGGTGTGTCTATGTTACCGCATGCTGCACTTCACTCACCACCACCCATGTCACCACCATGTAGTAATGATAATAAAACACCAAGGGCGCGTAACGATAAAGCACGATCACAATCGTCACCACCTCATCCATCAGCGTTTTCAAGTTCACCTCGATCGCCACCACAAAGGTTGTTCAATGATCATGAACCCCCACTACCTCCCCCACCGGTAGCACGTAAACCGATGAGGTCTAATAGTGTGCGATCGCAAGGGAGCATAGAAGAAGACATTGGGAATGCCGAACCGTTTGGTTTCCAGACTGCAAATTTCCCTCCCCCTCCACCCCTCCCTCACAAGGAACCCCAACCTCCTCCTGTGAAGAGGAAACCCTCACCAAGTGGAAGCGTGAAAGGAAATGGGAACAGCAGTGAGAATAAAAAGATTACTCGTGTTGCAGAAATGGGATCTACAGACTCACTCGACGATATTCCTCCCCCACCCCCACCGGAAATGGTACCAGTGGCTTCAGATGCTGACCTACCACCTCCCCCACCGGAAGTGTTATTCCAGGACAGAGACAGAGCTGGCAGCAATGGTAAAGCAGCTCCTCCTCCACCACCGCCGAAAAAGGGTCGATCCAGAACAAGTACTAGTGAAAAAGGACCGCTGCCATCTTGA

Transcript

gene11142.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL23	Amyloid beta A4 precursor protein-binding family B member 1-interacting protein OS=Gallus gallus OX=9031 GN=APBB1IP PE=2 SV=1
Q8R5A3	Amyloid beta A4 precursor protein-binding family B member 1-interacting protein OS=Mus musculus OX=10090 GN=Apbb1ip PE=1 SV=2
Q70E73	Ras-associated and pleckstrin homology domains-containing protein 1 OS=Homo sapiens OX=9606 GN=RAPH1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003212 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR039664 all species →	Family	GRB/APBB1IP	Interproscan
IPR039665 all species →	Domain	APBB1IP, PH domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11243 all species →	GROWTH FACTOR RECEPTOR-BOUND PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23488	RAPH1; Ras-associated and pleckstrin homology domains-containing protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.