Gene detail

Detailed information of gene11202.t1 in Actinoscyphia liui

Genomic Location: chr3:31504160...31511464
NR annotation: XP_031571041.1, uncharacterized protein LOC116305301 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene11202.t1

ATGGAGGGTGATCGCAGCTTGCACCGCCTTTTCTCGCAAAACGCGAAAACCTTCTGCGGCAATGTTGCTATTGAATATGAAAATGTGAAGTTAACGTACGAAACATTGGACCGAAAAAGTAACCGATTGGGAAAGTTCCTGATGGATAAATTGTCCATCCAAAATGAGGACGTGGTGGCGATTTTATTGCCGCGTTCCCCTGAGCTGTACATCACGATGCTTGCAGTACTAAAAGCAGGAGGGGTTTATGTTTGCATAGATCCACAGCACCAACGAAGCAGGCTGGGATTCATTCTTAAAGATACCCAAGCTAAAGCATTGATCATGACGCCGGCATGTATCCAGCACGATTTGGATGCAGTCCCAGACGGCACACCTATCATCGATTTAAAGTCCACCACATTTGAACAAGAGCTCCAATCTTACAATACCTCTCCCATACTGGATCGCTACGTCCCTTCTTCAAACTTGTGTTACATCATCTACACATCGGGGTCCACTGGAAATCCAAAAGGGGTAGAAATTGAGCACAGGACAGTGTTGAACTTTATCGAAGGAGAATTAGAGATTTATCCCATCAGTTCTCAAGACAGAATTCTACAAGGGTTTTCGCCGAGTTTTGACGCGTCAGTAGAGGAGATATGGCTGGCTTTCAGCACAGGTGCCACTTTGGTAGTTGCCAACCAAGAAGTAATGCAGTCAGGACCAGACATCCCTGATCACCTCGACAGACTGAAAATCACGGTATTTTCTACCGTGCCCGCCCTGCTACGAACCATTGATGCCTCAAGCAGCACCAATCTCCCTCTTCTGAAGCTGCTGATTTTAGGGGGGGAGGCCTGTGGCGAAGAACTGTCGGTCTGGTCTGAAGGAAGAATGTTAGTCAACTCGTATGGTCCGACAGAAACAACCGTTGTAGCCACTGCATCAATAGTTCAACGAAACAAGAAAATTACCATAGGAAAACCGCTCAAGAACTATAAAGTCTGGATTCTTGATAGTAATCTAAATGGGGTGCCACACGGTCAGCAGGGAGAGTTATGCATTGGTGGGCGGTGCCTGGCACGTGGATACAGAAACCTCATCGAGAAAACCAATCAGCAGTTTGTTGCCCATCCAGTGCATGGGAAGATCTATCGCACAGGTGATATGGTGCGCTTCAACGATGACAGCGATTTGGAGTATCTGGGGAGAATCGACGATCAAGTCAAAATCCGTGGATTTCGAGTTGAAGTTGGAAGCATCGAGACGCACCTTTATAATCTGGAAAACATTGGGATTGCATCAGTGGTTGTTATCGCCAATCCAAAGGGTCAACAGTTTATGATTGCGCACATCAAACTTGAAGATAAAATCAAAGGGTTTGACAGTATCAGTGTTGTGAAAAGCTTGAAAACCTCACTGCCTGAATACATGATACCAAATGGTTATGTTCTGCACGACGAGTTACCTAAGCTGGCCAGTGGAAAAATCGACAAAAAGACACTGAAATCCGCAACATACGAGATCCAGCCGTTCAAAAGCAGCCAAGAAAACTATATTGCTCCCAGAAACGAAATTGAAAAGAGAATTTGTGAAGTGTGGGAGGATAAACTTGGCAACCAGAAAGTATCAGTTGAGGACAACTTCTTTGATCTTGGCGGCCAGTCTGTGATTGGAGCACTGATTGTCAGTGAACTTAGAAAAGAAGTCATCAACGTTTCCGTGAGAGATTTGTACCTCAGCCCAACCGTAGCGGGACTATCTGCTGTGGTGCGGTCGAGAAACTCTGATACAGACAAGGTAACCATTCACGTCCCGACCACCCCTCTGACTGGCACCCCCAGGTACTACCTATGCACTGTTATGCAAGCTTTCTGGTTGCTTACCATCTCAGCTTCTATGGCTATTTTTGGTTTGTACTCGATTCTGTTATTCATTCAGCTATACATTTATGTGTATGGTGCCTTTGGTATCCAAGGATTCCAGGCAACGATGCTGTTAGCACTGGGTGTTATCTTGGTCTCGATGCCTTTGTACATCATGTTTTCCATACTCCTGGCGTACGTTGTTAAAAAGATATTCCTTTGGCGTGTGACCCCTGGTACATATGCGTTATGGAGCATGTATTATCTGAGATGGTGGATTGTGAAAAACACCATGTCTTTGGTACCAAGTGGTGCTATATCTGGTACACCACTAATGAACGTGTACGCACGTATCATGGGAGCAACGATCGGGCGTGGAGTCTACTACGGAACGCAACTACCCTGTGACTTCGACCTGCTGGAAATTGGTTGCAGTGTAACAATTGAACAACAAGTGTCGTTCGAAACGCACCGTGTGGATAAAGGGGTCTTGATTCTTGCACCAATCACAATTGCAGACCATTGTAGCATTGGAGCCAGAACAACGATCGCCTTGAACAGCATCATCAAAGAAAACGTGCGCATCGAGCCACTGACCTTAGTGACCGATAATAGTGTCATCGAGGAAGATTCTTACGTGTCTGGATCACCAGCAACCCAACAAAAGCAGATGAGCCCTTACGAAGGCAAGCCAACTGAATGGTCCTGGTCGTGGTGGGTACCCTGTGCTCAAATAGCTTTCCTTTCTGTCTTGACATTTGTGTTTGCGCTACCCATCACCTGTGTTGTCATGACAATCATGTCAGTGCCTTACCTTTATAACGCGTTCCTCCAATGGAACATGGGTGCAATCGCCATAATGGTACCAATAGCTGCTGTTTTTATACAAACACTATTCTATTTGACGACTGCTCTTCTTAAATGGGCTTTTGTTGGGAAAATGGAGGAAGGCGTGTTTTCTATCAATTCCTGGAGGTTTCTTGAGCTGTGGATCATGGAGCGTCTAATTGCGTTCACCTTGTTCACCTCTAAAGAACTCTTTGCCACGCTGTACACGAATGTGTGGTTGAAGACGCTAGGGATGGAGGTAGGAGCACAAGCTGAGTTCTCAACAGCCTTTAATTATGTCCCTGACTTGACAGTACTAGAGGAAGGATGTTTTGTGGCAGACCACGTGTGTTTGGGTGGGCCAGTGTTTCATGGAGGTACCTTCTCGCTGTCTAGCACCAGAACTGGTTATCGTACATTCCTGGGTAACAACTGTGTGGTGAAACAACAGTCCATCGTTGGCGACGAGGTTTTAGTTGGTGTATTGAGCACAACCCCTGAATTTGCAAAGAATGGAACATCATGGCTTGGATCGCCTTCCTTCCTGCTGCCTTCAAGACAAAAGAGCAAGAACGCCCACCCTTCCATCCGTACATTCAACCCTCCGTGGTACTTGTATGTCAGTCGACTGATTTGGGAATTTTTCAAGCTCTTCTCCCCGGCACTGATCAGGCTTTACGCTGCTTTTGGACTTACCACGCTCATCATAAAGGTGTCATTCCCAGTCTTCCAAGAAGGTACCGTGCTGTTCTGGCTTTCTGCTGCATTCTGGGGATGGGGAATCAGCGCTTGCATCCTCTTCCTCGTCATTCTGTCCAAGTGGATTCTCATCGGTCGATTCCGTCCTTGTGAAAAGCCTTTGTGGAGTAGCTATGTTTGGCGAGCTGAGCTTGTAGCATCCCTAGAAGAAAACGTGGCCTTATCGTTTGGGGTGTCAACTCTACTCGGTACACCGTTCATTGGTTGGTGGTATCGTGCGCTTGGAGCCAAGATAGGATCGCGTGTGTACCTAGCAAGCATCTATCTGACTGAAGCTGATCTAATTGAGATAGGAGATAAATCTTGTATTGCTGCTGGCACCACCATCCAGGCTCACCTCTTTGAAGATCGCGTCATGAAGATGGACAGACTGATTATTGGCAATGAATGTACCATTTGCAGTAACTCCATTGTTCTCTACGGTGCTAAATTGGAAGACCGCTGTACTTTGATGCCGCTGTCACTATGCATGAAATCAGAGACTCTTCAAGGGGATGCAGTGTATTGTGGGATACCTTTACAGAATGTTCATACTGAATTCATTGAAGATGCAGGGTATGCTCCTTCCAAAGACACCACGCCCCTCCTTAAAGATGCCTTCCACAATCCTAAAATGGATTTCCCTTAA

Transcript

gene11202.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A5K6CNB8	Delta-poly-L-ornithine synthetase OS=Acinetobacter baumannii (strain AB307-0294) OX=557600 GN=posA PE=1 SV=1
Q70LM5	Linear gramicidin synthase subunit C OS=Brevibacillus parabrevis OX=54914 GN=lgrC PE=3 SV=1
O68008	Bacitracin synthase 3 OS=Bacillus licheniformis OX=1402 GN=bacC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002098 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF00550 all species →	PP-binding	Phosphopantetheine attachment site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR009081 all species →	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR011004 all species →	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR010071 all species →	Domain	Amino acid adenylation domain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR036736 all species →	Homologous_superfamily	ACP-like superfamily	Interproscan
IPR012728 all species →	Domain	Pls/PosA non-ribosomal peptide synthetases, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45527 all species →	NONRIBOSOMAL PEPTIDE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031177 all species →	Molecular Function	phosphopantetheine binding	Interproscan
GO:0043041 all species →	Biological Process	amino acid activation for nonribosomal peptide biosynthetic process	Interproscan
GO:0044550 all species →	Biological Process	secondary metabolite biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene11202.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.