Detailed information of gene11249.t1 in Actinoscyphia liui

Genomic Location: chr3:32256204...32258066
NR annotation: XP_020903389.1, coiled-coil domain-containing protein 103 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9D9P2Dynein axonemal assembly factor 19 OS=Mus musculus OX=10090 GN=Dnaaf19 PE=1 SV=1
Q8IW40Dynein axonemal assembly factor 19 OS=Homo sapiens OX=9606 GN=DNAAF19 PE=1 SV=1
Q6DGB6Dynein axonemal assembly factor 19 OS=Danio rerio OX=7955 GN=dnaaf19 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008687 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15867
all species →		Dynein_attach_NDynein attachment factor N-terminusFamilyInterproscan
PF13877
all species →		RPAP3_CPotential Monad-binding region of RPAP3DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042422
all species →		FamilyCoiled-coil domain-containing protein 103Interproscan
IPR031733
all species →		DomainDynein attachment factor, N-terminalInterproscan
IPR025986
all species →		DomainRNA-polymerase II-associated protein 3-like, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28572
all species →		COILED-COIL DOMAIN-CONTAINING PROTEIN 103Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003351
all species →		Biological Processepithelial cilium movement involved in extracellular fluid movementInterproscan
GO:0007368
all species →		Biological Processdetermination of left/right symmetryInterproscan
GO:0036157
all species →		Cellular Componentouter dynein armInterproscan
GO:0036159
all species →		Biological Processinner dynein arm assemblyInterproscan
GO:0070286
all species →		Biological Processaxonemal dynein complex assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene11249.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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