Gene detail

Detailed information of gene11264.t2 in Actinoscyphia liui

Genomic Location: chr3:32405887...32442808
NR annotation: XP_031558188.1, protein sidekick-2-like, partial [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene11264.t2

ATGGATATTGCTTATTCAAAAACAGCGTCTTCATTTTCATCTGCAACCATAGACAAGACTGTCCTATTCCAAGGGAATAGATGGAATCATGATAGCGCAAAATGTTTCCACTGGGATTCTATACATGCTGAGCCCTGGCTGGAAATAGATTTAGAAAAACGGTACATTATTTGCGATATCTTCATCACCGTGTACAGCAGTTATAAAGACAACCATGTACGTTTAACGAAGTTTGAAGTCCTGGTATCAAATAAACCAGGTGGTGAGAACGGTAGTAGATGCGGTACATACCACAGCTTATACAAACAGACGCACGGTCGTATTTATTGTGAAGACAAGCCTAGAGGAAGATACGTAAGAATTGCATCGAAGGCAGGTCAGTCACAATATTTTGGAATGTGCTCTGTTGAAGTTAAAGGTTTTCGACTTCCTGGTTATTGGCTGGTTGACTCTGAATACCCACGATTCAAAGGACAGAAGCACTACTATCGTACAGACTTCGTACTGAGTTCCAAGAACTGTCTTACTTTCTTCTACATGTTGAACGGTACGGACCCAGGCCGCTTGAACGTGTACTTGGGCGGTTACTTAGGAAAGGAGACGTTGCTATGGAGACTGGTAGGGTACCAAGGTGAACACTATTCATGGTATAAAGCTCAGGTACCGATTGCCGCGGAAATAGCCTATCAGATTATTTTTGAAGCGATTGTAGGAACAGAATATGCAGGAAGCATTGCTGTGGACAATATTACACTATCAGTTGAAGAATCTTGCTCATTTTTTCCACCAATGGCCCGAAGTTATGTGTCAGGAATGAAGTCCAATATGATTGGACACATCCCTATTTATCAGGACTGGTTGTTACCAGCCTTATCGCAAGCTGGTATGTGGAGCAAGTACTGGGAACCATGCTTTCACGCACTCAAGGATGGCTGGAATGCTACCACCTTTCTTAACAACTGCAGTGGGAAAGGGCCACTTGTTTTTCTGATAAGAAAAGAGTCGCGGGTTTTTGGTGGCTTTACAGATGTAAATCACCTCAATGATTACGTGGGGAGTTCTCAAAACTATGCGCTCAACCGACCAGCCAATCAATCGTCTGACTACGGCAGTAATAACCTTGCAGCCAATGCAGTTGACAACCGTCTGGAAACGTCGTCCAACACTAATTCAGAGGAAAACCCGTGGTGGAGAGTTGACTTAGGACGTCCAACGTTAGTAACTAGAGTACACATTGTCATAACACAAATGATGTACGATTTCAAGATTTTGGTCAGCCATAGAGCTAACGGGAACCTGTCTACTTATTCGTGTGGTGGTTCAACACTGTTATCCATCCAAGGCTCGGAAGGCTCGTTCAATTGTGACCCGCCCATATATGGTGAGAGTGTGGAGATTAAAATCTATAGTAGCGATTTTACTTTGAACATGGCAGAGGTTAAAGTATATGGCTATCAAGGTGTCCCATCGCCTAAAGCGTTTTTGTTTATGTTTAATGAGAAGCTTGGATCTAAAATGGAACTACTTCCAGGAAACTATGAAGTTGGCACGTTCTTTACTGAACACGGGGTTATGTTCGGCAAAGGAGATCTGGTTATTAATATAACTGCAAGAAACATCACTAATAACCCCGGCATCTCGTATCAAGCACCTCCTACCAAAGGTCCAATCACAGGACATCAACATTTCCAGCCTGATGACTTGGAAGTATTGACCTTAGGAGTCCGTTACCTTAAGCTGAGATACCACGATTTGTTTATGGAGTCGGCCATCTCTCACTGGTCAATGGATGACAAAAACGACTTGAAATGTTCCAAGTCAGGCTTGTGGTCCCCGTCAAAAGATGTCCAGAACGTTCGTGGTATTATTAACAAAGCGTTGACTTTTAATGGCTCTGGACAGATAATCAAACTACCAACACAGCTTACCGTTGCGGACTGCCTTTTTAATCCGAAAAACTGTCAAAATGGTTTAGTTGTTTCAATGTGGATTAAATTCTACCACAAGATTCCAAGCCAACAGCAAACTTTCTGGACATCCCAGGCCACGCCCACGGACTTGGGGTTCACAGTTTTTCAGCCAGAGTCCAAAAGTTCCATATCGGTTAACGCTACACTATCGAACGTTAGATGCACTAAGACTATTTCTGCGTGTACCGGAATCTGGTTTCATTTGATGTTTCGTTATCAATCGACCATGGTCAATGGAGAAGACTACCCACACATATTTATCAATGGCGCGAAGAAGAAATTAAAGTCGACTTCAAAAAGCTGCGAGAGTTGGTCTAGCAGTAATTATCAAAACGATTATACTAGTATAGGTAGCGTTAATGCAACATTGGATGAGCTCGTTGTCATCAAGGATAACATATCTGATAAAATGATCAATTATGTTTATTACTATTATAGAGGAGAAAGTAACGTCCATCTCAACGCCATCTTGCTAACACAACAAAGCTGGAGCTCAAAATTACTTAACAAAAACAGTGACTTATATCAGCGACTCGCTTCAGAACTAAGGACTAACATTTCCCAAGCCGATAAAGACAGCCGGATAAAGAGCTTTGAAAGTATAAAATTCCGAAAGAAAGACGGTAATGCAGCAGTTGATTTATTCCTTTCTTTTACTGGCGAAGGATACGATCACATGGAGAATGTGGTGGTGTATCTTGAGAACTCTTACAAAATACTGGATTATTATTCAAACGATGTTTACATCAAAACTTTAAATCTCACGTATGACGTGAATGACGCTACCATTACCTTATACTTCGCGTGGTCCAATGTCTCCAGAGCTTTAACTCATGGTGTATTCAAAAGATACAACGTCTTATATAAGAACCTGAACGACCCTATGAATGCTTCACACAAGCATGTGTGTTATGATGACGGACTAGACAATGTTACTTACTATCTGAACAGACTACAATATTATACAACTTACTCCATATCAGTCAAGCTGGATACGTATGAAGGTGGAGGGAGATACACAGAACCTATCAACGTAACGATTGGAGTCTTAGTATTTATACTGAAAAGTTCTTTAATAGCTCCAACGATTGCTCCCGAAAACGTGACAAGAAGCAATGTATCTACAACGTCCATCCAAGTTCAGTGGTCGCTCATTCCAGAAAAATACCACCGTGGCCCCGTTAGTAGTTATGTAGTCACGTGTCAGTTAGTTAATGGATCTAATATTAGTACCCACATCGTGAGCGCTCCATTCAACGTGACTATTATTGGAGGTCTCTCAGCGTACAAGCAATATAACGTATCGGTCTGTGGAGTTTCCATTGCAAACCAAACAGGACCTTGTCGATGGACTGACATATGGACTAAGACAGGCGTTGCGGAAATAGCTCCTACCATCCTGCAGTCCTACAACACCAGCTCAACCAGTGTGTACTTAACATGGGAACCAGTACTTCAGAACTCGAGTGGCTTGAACGGAATACTCATCGCTTACATGATACAATGTAACACTACTGACAACCCGCATACACCAGACGTTATCGTTTGTAGTGATGCACTCAATGCTACTGTACCAGGTTTGATGAGACACGAAACGTACAGCATTAGGATTGGTGCTCTTACATCGAAAGGACCCGGGGTATTTAGCTCACCAGTGAATGTCACTACGGATGAGGACGCACCAGAAACTGGCCCCAGCACATTGAATCCCGTCAGCGTGCAATCCAACTCACTTACACTTTCACTCAGTCCTCCTTCTGATGGAGACGCGAATGGCGGAGTTACTGGTTATATCATAAGGATATACGATAAACTTAGGAATAAAGTCACGAATATAACAGTGAATACGACATCACTGCAAACACTGAATAACATTATGCCATACACTGACTATGAGATCAGCGTGATCGCTTACAACGACAAAGGCATTGGACGTAATGCTACCACTATTGAAGTGAAGACAAAAGAAGGCGCACCTAGTGGACCTCCATCCAATGTCGCTGCAAGTCCTCAAAACGGAGGGCGTGTAACAGTTTCCTGGGATGCTGTCAATGCCTTTAAAGTCAATGGAATAGTGAAGTCGTATGTTATCATTTATTACAAGTTATCTGCACCCGACATCAAGTACAATGTTACTATAATAGTGCGAAACTCCAGAAGGAAAAGGCGATCGATCGATTCATATGTACTAACTGGTCTTAAACCCTACACCCAGTACGGGGTACAAGTACTGGCCGTGACTGTAGGAAATGGAGTGCCTAGTATACAGTTTAACGTGACATCAGGACAGGACATCCCTAGCCACTACCCACAGAATCTTCGTTCTCACAACATCAGCTCGACGTCGTTGCTAGTCAGCTGGGACGAGGTACCCGAAGAAAATAAAAACGGGATTATCAGTGGATATATTATTATGTACCAGAGTGAAAATACCGTATACAGAGTTCAAAATGTGTCAGATGGGAGCCGCAGATCTACTACATTGAGTGGTTTAGAGAAATACGAACGATATAATCTGACAATACGTGCCTATACTATCATTGGTTCTGGCAACATCTCTGAACCAGCTGTGTATGCCTGGACAGGAGAAGATGCTCCTGATGGCTACCCGGTCAACGTGACTGCCACGCCCACCATAACGACCTTAACAATCAAATGGGTTGCCATGGTAAAGAGGCTAGAGAACGGCATCATACGAGGTTACCAAGTGTCCGTGTTCGAAATGAACGGCATATATAAGACAAATGCCACAGTGTCTGCTAGTAGTCTTACTGGTGTCGCCACTGGACTTGAAGCCTGGACCAACTACACAGCTCGAATACGTGCATTTACGAGTGTTGGTAGTGGACCATGGAGTCCTCATCAGAGGCTGACTACAGACGAGCAAGCCCCTCAGGATGTACCTGGTGCGGTCCAGGCACACTTTACAAGCTCTACATCAATAAGAGTTCAGTGGAATTTAATCGACCCTGCTTTAACGCGAGGTATTGCCCGTGGTTATCATATATACTATCATGCTCTGGACACACCATTTTCCAAACCACTACTGATGGTCAAGGTGGGCGCGAACATTGTACAGGTACATGTGACGAGTCTGTACAAGTATGTGGAGTATGAGATATACATCAAGGCTGTGACTAATAAAGAGGGAAGCGCCAGCAAAGCAGTTAAAACTAGGACTGATGAAGACAAACCCGGTCAGCCGCCATCACAACTCGTACACCTTCTACCGTCCCCAACAAGTATCTGGTTAGGCTGGTACGAAGTGAATGATGGCTACAGTAATGGCATCATACAAGGCTACAAGCTAACATACAGAGAGATCTCCACATCTGATCCACTCATTACCAAAATGTATACACGATATGACTTTTCATCGACGCTGTTTAACCTGCCCAGCTACGTGGCCTTTGAGATCACCGTACGTGCCTTCACTATTAAAGGGGATGGACCAGCCTTGAAGCAGACTATCAGGACCGACGAGGACAAACCATACGAAGTTCCAGAGAATTTAAGAACTGAAAACCACACCTCAATACAGACTCTACCCGTTTCGTGGGACCCCATCCCTGCTGGAGGTGTCCCGGGGATTTTGCTCGGTTACCAGTTTTTGTATAAACCGGTAAGTACCGGAGACGTCGACATCGAGGACGGCCTTACTAAAGAAATCAACCTGCCACCTCATCAAACAAGAATAGTATTAACAAACCTTGATATCTATACCCGATATCGTATAGTCATCTCTGGACGCACGAAGAAAGGGCATGGGCCCCCGGCTATTACCTTTGGAGAAACATGTTATTGTAGAAAGAGGTTGACTTCCAGTTGGCTGTCATTTCCACCGTACGTCAACGTAAGTGGGGATGGCAAAGTGATGGGGATAATGCCGTCTATTGTCAAAGACATGGTCGTATCTTGCTGTCAGTTCTGTAAGCATCATGGCTTGTCCTACCTAGATCTCTATCACGATGGATACAATCAATCAGCCCGTAAATATTCAATAGATAATGTAAAAGTCATGATCGACGGAACCACAGATGTCATCTTTCCCGTTCCCGGGTTCGAGTCACAGGATTCCTACAAGACAACGTACGGTTACAATCGTCTGGTCGACACACCAGGAGTAGTCTTTCTTCTTTCTTCTCGCTCCGCAGAAGGGGTTTTATCCAGACAGATGATCATGTCCATTTGGGAGGGATGGCCTCTTATTCTGTTTGCTCTACTTTTCGCCTTCCTAGTGGGAATCGTTATATGGGCGTTGGAATGTCAAGTTAACGAGGAGCAGTTTCCAAAGTCTTACATTAAAGGTTGTTGGGAAGGGTTCTGGTTTACTTTCGTTTCCATGACGACCGTTGGGTATGGCGATCGATGCCCAACGTCCATACCTGGTCGTATCTTAGCAATATTCTGGACATTGTTTGGTGTGATTCTTATTGGTATTATTGTAGGCAATATTGCCACGTCTATAACAAGTGTTGCTGTCAAACAAGCCAGTTCTCTCTATGGCATGAAGGTTGGTGCGTTGAAGAACTCGTTCGAGTATCGTTTTGGGATTCGAAGAAATGCAAGAATGAACACAGAACGTGAGTACGACACTTACGAGCAGATTTACAAAGACATAGACGATGGTCGTATCACAGGTGCACTGCTCGATGCTTTCGCTATGGGAAGTAGAAAAGATCTGTTCGAGAAGCCATTCACACGAATAAAGGCGATCTATGACGTGAAGTTTGTCCAGGGCATAGTAATAGCAGGAAACACGACAAAACTAAATAGGTGTTTTCGTCGATATACAAGAAGTAACGCTAGAATGATCTCAGAAACCGTAAAAAACAGCGTTCGCGCGGTGGAGGTAACCAACACACCGTTGGCATCCGAGATGTCGTCAGGTATCTTTGATGCTGGCAGTCCAGTGTTTTTATTGGTGCTGAAGATGACATTGGGATTGCTAGCGTTCTTGCTAGTTGTTGGAACCATATGGCAGGCCATACGATTTAGGAAGTCCAGGAACGTTAGTTCAGATCAAGCGAGGCTCGATCTGGTTGAACTTGCGAAGAAAAGGAACGAGTTCTTTTATCACCGTTTCGCTAACGCCATTGAACGTCTAAAGAAAAAACACAAGCAAGAATGGCTGATGTTAAAGAAAGCCAAATCAAAGCGGACCAAACCGTTTCAAAATGAAAAAGGCCGAACCTACACTGGTACCACTGATGACGGCGAACCACAATACTAG

Transcript

gene11264.t2

Protein

gene11264.t2

MDIAYSKTASSFSSATIDKTVLFQGNRWNHDSAKCFHWDSIHAEPWLEIDLEKRYIICDIFITVYSSYKDNHVRLTKFEVLVSNKPGGENGSRCGTYHSLYKQTHGRIYCEDKPRGRYVRIASKAGQSQYFGMCSVEVKGFRLPGYWLVDSEYPRFKGQKHYYRTDFVLSSKNCLTFFYMLNGTDPGRLNVYLGGYLGKETLLWRLVGYQGEHYSWYKAQVPIAAEIAYQIIFEAIVGTEYAGSIAVDNITLSVEESCSFFPPMARSYVSGMKSNMIGHIPIYQDWLLPALSQAGMWSKYWEPCFHALKDGWNATTFLNNCSGKGPLVFLIRKESRVFGGFTDVNHLNDYVGSSQNYALNRPANQSSDYGSNNLAANAVDNRLETSSNTNSEENPWWRVDLGRPTLVTRVHIVITQMMYDFKILVSHRANGNLSTYSCGGSTLLSIQGSEGSFNCDPPIYGESVEIKIYSSDFTLNMAEVKVYGYQGVPSPKAFLFMFNEKLGSKMELLPGNYEVGTFFTEHGVMFGKGDLVINITARNITNNPGISYQAPPTKGPITGHQHFQPDDLEVLTLGVRYLKLRYHDLFMESAISHWSMDDKNDLKCSKSGLWSPSKDVQNVRGIINKALTFNGSGQIIKLPTQLTVADCLFNPKNCQNGLVVSMWIKFYHKIPSQQQTFWTSQATPTDLGFTVFQPESKSSISVNATLSNVRCTKTISACTGIWFHLMFRYQSTMVNGEDYPHIFINGAKKKLKSTSKSCESWSSSNYQNDYTSIGSVNATLDELVVIKDNISDKMINYVYYYYRGESNVHLNAILLTQQSWSSKLLNKNSDLYQRLASELRTNISQADKDSRIKSFESIKFRKKDGNAAVDLFLSFTGEGYDHMENVVVYLENSYKILDYYSNDVYIKTLNLTYDVNDATITLYFAWSNVSRALTHGVFKRYNVLYKNLNDPMNASHKHVCYDDGLDNVTYYLNRLQYYTTYSISVKLDTYEGGGRYTEPINVTIGVLVFILKSSLIAPTIAPENVTRSNVSTTSIQVQWSLIPEKYHRGPVSSYVVTCQLVNGSNISTHIVSAPFNVTIIGGLSAYKQYNVSVCGVSIANQTGPCRWTDIWTKTGVAEIAPTILQSYNTSSTSVYLTWEPVLQNSSGLNGILIAYMIQCNTTDNPHTPDVIVCSDALNATVPGLMRHETYSIRIGALTSKGPGVFSSPVNVTTDEDAPETGPSTLNPVSVQSNSLTLSLSPPSDGDANGGVTGYIIRIYDKLRNKVTNITVNTTSLQTLNNIMPYTDYEISVIAYNDKGIGRNATTIEVKTKEGAPSGPPSNVAASPQNGGRVTVSWDAVNAFKVNGIVKSYVIIYYKLSAPDIKYNVTIIVRNSRRKRRSIDSYVLTGLKPYTQYGVQVLAVTVGNGVPSIQFNVTSGQDIPSHYPQNLRSHNISSTSLLVSWDEVPEENKNGIISGYIIMYQSENTVYRVQNVSDGSRRSTTLSGLEKYERYNLTIRAYTIIGSGNISEPAVYAWTGEDAPDGYPVNVTATPTITTLTIKWVAMVKRLENGIIRGYQVSVFEMNGIYKTNATVSASSLTGVATGLEAWTNYTARIRAFTSVGSGPWSPHQRLTTDEQAPQDVPGAVQAHFTSSTSIRVQWNLIDPALTRGIARGYHIYYHALDTPFSKPLLMVKVGANIVQVHVTSLYKYVEYEIYIKAVTNKEGSASKAVKTRTDEDKPGQPPSQLVHLLPSPTSIWLGWYEVNDGYSNGIIQGYKLTYREISTSDPLITKMYTRYDFSSTLFNLPSYVAFEITVRAFTIKGDGPALKQTIRTDEDKPYEVPENLRTENHTSIQTLPVSWDPIPAGGVPGILLGYQFLYKPVSTGDVDIEDGLTKEINLPPHQTRIVLTNLDIYTRYRIVISGRTKKGHGPPAITFGETCYCRKRLTSSWLSFPPYVNVSGDGKVMGIMPSIVKDMVVSCCQFCKHHGLSYLDLYHDGYNQSARKYSIDNVKVMIDGTTDVIFPVPGFESQDSYKTTYGYNRLVDTPGVVFLLSSRSAEGVLSRQMIMSIWEGWPLILFALLFAFLVGIVIWALECQVNEEQFPKSYIKGCWEGFWFTFVSMTTVGYGDRCPTSIPGRILAIFWTLFGVILIGIIVGNIATSITSVAVKQASSLYGMKVGALKNSFEYRFGIRRNARMNTEREYDTYEQIYKDIDDGRITGALLDAFAMGSRKDLFEKPFTRIKAIYDVKFVQGIVIAGNTTKLNRCFRRYTRSNARMISETVKNSVRAVEVTNTPLASEMSSGIFDAGSPVFLLVLKMTLGLLAFLLVVGTIWQAIRFRKSRNVSSDQARLDLVELAKKRNEFFYHRFANAIERLKKKHKQEWLMLKKAKSKRTKPFQNEKGRTYTGTTDDGEPQY

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z5N4	Protein sidekick-1 OS=Homo sapiens OX=9606 GN=SDK1 PE=1 SV=3
Q3UH53	Protein sidekick-1 OS=Mus musculus OX=10090 GN=Sdk1 PE=1 SV=1
O97394	Protein sidekick OS=Drosophila melanogaster OX=7227 GN=sdk PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000019 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF07534 all species →	TLD	TLD	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR006585 all species →	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR050713 all species →	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR006571 all species →	Domain	TLDc domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16353	SDK; protein sidekick	-	Cell adhesion molecules	ko04515	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.