Gene detail

Detailed information of gene11358.t2 in Actinoscyphia liui

Genomic Location: chr3:33707566...33709573
NR annotation: KXJ17814.1, Poly(A)-specific ribonuclease PARN [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene11358.t2

CTGATCTATCAAAGTGCAAAACAAAGGTTTGCTTCAGGCATCCAGTTAGAAAAAAGTACCAATGAGAAAAGAGAATGTTACATTGTGGTCACTAAAGTAGACGAGGATGAAAAGAAAAAGTTTGAAGAAAAGAAGCAACTGAAGGAGAAGGAAGTCATTGAAAGTGCTGTTGGTTTTTCCACGGTAATGAAAATGCTCTCGCAATCTGGCAAGCTTGTGGTTGGTCATAATATGCTTCTTGATTTGATGCATATAGTCCATCAGTTTTATTGTGCCCTTCCTGAAGAAGTTGATGAATTCAAAGCAACCATTCAAGCCTTGTATCCAAGGATTGTTGACACCAAAGTCATGGCAACGACACAACCATTCAGAGATCACCTACCCTCCACTGTCTTAGGGGACTTGGTGAAACACCTCTCTGTTCCACCATTCAAGAAGCCTGCAGTTGAACTGGATCAGGAATTTTCTAGATATAAAGAAGGAAGTGAGAACCTCCATGAAGGCGCATATGATGCCTACATCACTGGAATGTCGTTTATTTCTATGGCCAACTACCTCGGCTGTTTCCAAGATCCACCAAAGTCAAGGATTTCCCCCGACTCAACACTGGTGTCTCCATTTGTTAACAAGATCTTTTTAATGAGAATGGAAGATATTCCATACCTGAACCTTGCTGGTGAAGACTTGACGCCATCTAGAGATCATGTGTTCTTTCTTACATTTCCAATTACCTGGAAATATAGCAACATCCTTGATTTGTTTAGCCCATTTGGCTTTGTCTATGTCTCCTGGGTTAATGATGAATCAGCCTTTGTCTCGCTTGCAATAAGGGGCAACAAAAATAAAGTTTTGGAAGCTATGGATGTTGAAGATGCTCCATACACAATAATGTCATATGCTGATTATTTTGGTTACCCAAGCCACGAAGTGCAACCTGACAACCCACAGGACTATGGCATTGGAAGTAAGAGGCATAGAGGTCAGGAAGAAAGTTGTTCACCAGAAAACAAGACAACACCAAATACTGAGGTCAAGGTAGATTTCAATGAATATGAAGAGGGAGAAATCATTGAAGAAGCCATGGAACCAGTGTCCAAGAAAAAGAAGATAGACAAAACCTTTGAGGAACCAGATGAATGGTAATGCTCATCACGTCAAACTGACTGTCTATTTGAGTTGTGATTGAGTAAATGAAGGCCTACCTAGTGCAGTGTTTGGGCTTTAATTTTAAGCTATTAATGCTTAATGAAAAACAAGGTTAACATACTTTGTGTTATTAAAAAATGTGTAATTTCTGTACAAAATAGGGTTGTCATGGCTTGTTATGAAAGTTTCATTCATGTTGTAAAATTATGTAATGATATTTCTAATATGAGTGACATTATATTATTTATTATATGAAATAGTAGACTAATCAAGACATCAATAGACCTTATTTCCATTGTTATAATGTACATACGGTGTATACTTATTTCAGTAAAATTATTCAATGTTATAAACATTGATAAGGATTGTGGGAAATATGAGTTTTGTAATGATAAATGGGAACAATTTGGCTTTATCAATTTATTTCATAAATTCCTCTGACCATGAAAGCTCCCATGATCCTCATCTATCTCACCTTTGAGCCTTCCTTTACTAATATTATTAAAATACATCTATATTTGACTACACATAAACTAATAAGTTTCTGAAGGATGGGTTGTGTAAAATATCATTTTTGCAGAACAAAAACTATTAATTAAGATTATTTACTAAGTTATGATACTACTTAGTTCAATCTTGTGGAATGGAATTCTGCTAACACCAAACAATGGTAAAAAAAACTGATGAAATATCTCCATCTTTGGATGGATTTCAAATATATCATGAGTTACATAATAAAATGTAAAGTTGTAGAAGAGAATCTCTTAGTAAAACTATAACCTGATCCTGTTTGAACCTAGGATTGACCACCTAGGATTACTACATTAAAAGAAATACTGGTCAGACTGCTCTTGAACATTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P69341	Poly(A)-specific ribonuclease PARN OS=Bos taurus OX=9913 GN=PARN PE=1 SV=2
O95453	Poly(A)-specific ribonuclease PARN OS=Homo sapiens OX=9606 GN=PARN PE=1 SV=1
Q5RC51	Poly(A)-specific ribonuclease PARN OS=Pongo abelii OX=9601 GN=PARN PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001811 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08675 all species →	RNA_bind	RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR014789 all species →	Domain	Poly(A)-specific ribonuclease, RNA-binding	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

No PANTHER signature was detected for gene11358.t2. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004535 all species →	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene11358.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.