Gene detail

Detailed information of gene11519.t1 in Actinoscyphia liui

Genomic Location: chr3:36135443...36143003
NR annotation: XP_020900673.1, probable acyl-CoA dehydrogenase 6 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene11519.t1

ATGGCGTCTGTGAGTTCAGTTTTCAAATGTCCTTTACGGAATTGTCGTGTATTTTCACGGCTTTCCTCCACATTGACCTCTAGTAAACCAGCTCTGAAACTCCGTCCTGATCCTTATGAATATTCGCAGGAGCCAATTTATGGTCCAGAACACGTTGAACTCAGAGAAGCTTTCAGAAAGTTTATTGACAAAGAAATCAACCCATTTGTTGATGAATGGGAGCGATCGAAGATGTTTCCTGCTCATGAACTGTTTAAGAAGCTTGGACAAGCTGGTTATTTAGGTGTCAGTAAACCTGTGGAGCATGGTGGTATGGGTCTGGATTATTCCTATACCGTGGCTTTGACTGAAGAATTAGGACATATTAGGTGTGGGGGTATTCCTATGGCATTTGGTGTCCAGGCAGACTTTACGACACCAGCTTTGGTCAAGTATGGCAGCAAAGAATTACAAGAACAGTTTCTTGTTCCTACTATTGCTGGTGATTCTGTAGCTTGTCTTGGAGTGAGTGAAAGTGGTGCCGGTTCTGATGTGGCAAGCATCAGAACTACTGCTGTTAAGGATGGAGATGATTACATTATCAATGGGGGTAAAATGTGGACAACAAACGGCATTCAGGCTGACTGGATGTGCTTGCTGGCCAACACTGGTGATGGTAACCCTCACTATAACAAGTCTCTTATATGTTTACCACTAAATCTCCCTGGAATCACCAAGGCTCGAGCCATTGATAAACTTGGCATGCACTGCTCAGACACTGCCGAGTTCTACTTTGACAATGTCAGAGTTCCTCAGTCCTACAGGATAGGTGATGAAGGCAAGGGGTTTGTGTATCAGATGTTGCAGTTTGTGGATGAGAGAGTGTTTGCCGGTGCATCAGCTTTGGTTCCTATGGACAGACTTATAGCAGAGACAGCTGAATACTGCCGCAATAGACCAGCCTTTGGGAAATCTATTCTTGACAACCAGTATGTTCACTTCAAGTTGGCTGAGCTGCAAACAGAAGTGGAATTGTTGAGATCATTGGTTTACAGAACAACCTATCTTCACATGAGAGGGAAAGATGCCAACCTATTTGCATCCATGTTGAAATTAAAAGCAGGTCGTTTGTCAAGAGAGGTAACTGACTCCTGCCTGCAGTTCTGGGGAGGAATGGGCTTTACCAATGATGTTGATGTCAGTAGAGCCTTCCGAGATTTTAGATTGTTGTCCATTGGAGGCGGAGCTGATGAAGTCATGCTGTCAATCATTTGTAAAGAGATGGATCTTCTTCCAAAGCCACCAAAAAAGAAGTGACGCTGAACAGAATGATATCAGTATTAGTATTGCCAAGCAATATTGTGCATAAAACCTGATATACAATCGAACCTCTATTAAGCGGCCACCCTTGGGGATTGAGAAGTGGCCGCTAAATAGAGGTTGGCCGCTTAATAGGTGGCCGCTTAATAGGGGTTCCACTGTAGTTGCAAAGCAACTAAAATGTAATATAGTTAACTCATATTACTACAGTCGAACCTCCCTTTGCGACCACTTCTCGTAAGCGACCACCTCTCCTTAGCGACCAGTTTTCCAAAATACCAAAAGTTTCCAAGTCAAATCACTATAGTTGGAACCTCTCATAAGCGACCACCTCTCGTAAGCGACCGCGACCACTTTTAGACCTAAAAGTTTGACATTTTCTTTTGTTTTTAACCTCCCGTAAGTGACCACTTGACAGATAATCGAGCGGAAACTACAACCACGGTCTCTGAGACGCGGTGTCTCCCGAGACTTTCCACGTGAACATCGTGCGCGATCGTACGACCAACCAACGCGCAAAAAGTACGGACTGTTCTGAAGTCTAGGTCCGTAGTGATTTTAACGCTTGTGAACATGAAAATCACCAGTAATATAAAAGGGTTGCCAAATTTAAAGCTTTTAGACAACACAACCTAATAACAGATCGAATTCAATTTGTAGCTATCATGAGACTTGTCCTGTTCGTCGTATCACAGGTAGCCCAAGCTCTATGTGAGAGGCTTGTTATCGAAGCCTATATAAGACTTTGTATGGGACCTTAGGATCTGGTCAATAACTCCGTAAATAATAAAGCAAATAAACTCTAACCTTCCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34275	Probable acyl-CoA dehydrogenase 6 OS=Caenorhabditis elegans OX=6239 GN=acdh-6 PE=3 SV=2
P15650	Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Acadl PE=1 SV=1
P79274	Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=ACADL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005630 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884 all species →	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11731	atuD; citronellyl-CoA dehydrogenase	EC:1.3.99.-	Pinene, camphor and geraniol degradation	ko00907	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.