Gene detail

Detailed information of gene11590.t3 in Actinoscyphia liui

Genomic Location: chr3:37230009...37251419
NR annotation: XP_028518499.1, receptor-type tyrosine-protein phosphatase C [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene11590.t3

ATGAAGCCATCAAAATCTTCACAAAGTTGTTTAAAGCTACCAAACTACCAAGTGTTCAAGATGAATGCCCTGCCATGGAAGACCCTGGTTTTGGTATTCTGTGTCTTGGTTTTAATGCAAGGAGTAACGTCTGCAGAAACAGGTTGCGTAAAAAGATCTCTTATTGGAGAAAACAATCTAAAGATTCCTGACAGCAGTTTCACAGCCTCCTCGTATTTATACGAGCGGACAGCGGACAGGCGTTACCGACCAAGTAATGCAAGGCTCAATGGTCAATGGGGATGGTCACCAAGGGATAATTACGATAACAGCGATTATCTACAGATTGACCTTGGTGCTGCACGAGTTATTACTGCTGTAGCAACACAAGGCAACGGTGGTAGAATACCAGGTAAATCAAACTTTACTGAATGGGTGAAATCTTACAGACTGAAGTTTACAAGTGACACCACCTCTAAGTGGGAAGATTATGGAACGACAATATGGATCAAAACGTGGCATTACAACATGAACAGCGACAAAGTTGAACGTCATGATTTTACAACTCCTCGAACAGCAAGATACATCAGATTCATACCAGAGAGCTATGAGGAGTGCAAGACGATGAGAGTCAACGTTTATGTCATCGATCAAGATCCACCACGTGTAACTGCCAAACCCTGTGAACGGTCCATACAGCTAACATGGTCCTTTAAACTGTGTGCAAGCATACCACCCAACTTTCAGAATACTGGATTTATTGTTAATGTGACCAACAAGGGAGTGTTTAACGTTGGGCGTGTCACAAGTTATAACATCACAGATCTACAGCCATACACTGACTATGAAGTACGAGTAAAACCTGTAGAATATGAACTGTGGAGTCAAGCGATCACAATCAAAACTACTGTAGCAGTTCCACAAGTTAAGCCCCACATCACCAGTAACGTGGCAAATTCTTCAACATCCATAGTCCTCGAATGGAAGCTGGAAAAGCCTCAATTGATCCACGGATCACTGAAAGGTTACATAATAAAATACACAGCACAAAGTGTACCAACAAAAACAGTGGACGTGGGTGTGGTCAACACGTGGACACTGATGTCACTAGAAAAATACACGTGGTACACAATAACGGTGTCAGTCAAGAACACCAAGTACGTTGGTCCACGTAGTGGAGAGGCGGAGATAAGGACGATGGAAGACGCACCATCTTCTCCAGTAAAGGTCCGTCACTCATTCATACCTGTCAAAGGATACGTTGGACCAGCCCTTGAGATCACATGGGACAAGCCACACAATCAGAATGGTTTCATCAGAAAATACACCCTGCTATACTACTACAATAACACCATGAAAGATACAACACAAAGGATTGATATCAACGCTTCCATTGGTCGTAGCATTGTCGTGAATATAACAATGATGGGCATGTTGTCATACAATATTAGTGCGTCTACTATAGTAGAAGGGCCATACAGTGATGGACATGTGGTCATTCCTGCTTATCCACCATGGGCTGCACCAACAAATGTCTCTGTTGTGTTCTTAAACACCACATCCATTGATACATTTTGGCATCCTATTTCTGATGAGAATAAGAACTGTGACATCACCAAATACGAGGTGAACTTGACGTTATATGATGAAACAAGATGTAAAGAAGATATCCTGATAAAAAGAAGCAGTACAGTACACGTTGAAGGAAAGAATGTGCACGCTATGTTGCAAGGGTTTTTAGCGTGTTCAGAGTATGGTATATCAGTGAGAGGCTATACAATGGCTGGACCAGGACCTTATAGTGAAACTGTTTACTTTACTACACATGAAAAACCAACAGTTCACGTGCACGAAGAAAGGACAGCAACTTCAAAACGTGGTTTAATAATTGGACTTGTGGTAGCGCTTCTTCTACTGATTATTTTTTTAGTTGGACTCGTAGCTGTTCTCATAAAATGGCGCCGCAAACGTCAGTACAAGGATTTAGCGATCCCGTTAAAAGCTTCTGATGCGCAATCTACTTCCAGCTGTAGAGGAACAAACAACCAAACTAACCCAGATGATGATGACGAAGATGAAGCTAATTACGTGAACGTTATTGACATATGTCCACTCTCAGTGTTTGATATGAAATTCTTGACGCCCAATGGGAACATTGACGAATGCAGTCTTAAACAGGAATTTAAGAACATACCAACGTCACATGAATATGAATGTACCCATGCAGAAAAACCTTCCAACAAAAAGAAAAATCGATACAAGAACATTGCTACATACGATCACTCTCGTGTTGTCCTGAAAGATGAGTACGAGTACAACGACACAGACTGTGATTACATCAATGCATCGTTTATACGCGGATATGACGGTTCACCGAGGACATACATAGCAACACAAGGCCCTTTACCCCAAACTGCTAAGGACTTTTGGCAAATGGTATGGCAGCAAAATACTGCAGCAGTCGTTATGCTAACAAACCTGGATGAACTGGGAAAGGAAAAGTGCCATCAATACTGGCCACAAAGAAGTGAACAATATGGAGACATAACGGTGACCAAACATCAAACACAAGTGTTTGCAGACTATGCTATACGAACTTTTCTCTTATCCAAGGCCGGCAAGACAAGCCACCGTGTACGTCAGTTCCATTTCACTGTGTGGCCAGACAAGGGAGTTCCTCAACATGCCACTGCAATACTGGCATTCAGGAGGAGAGTGCGTCAGGAAACTCCTGCCAATGCTGGTCCAACGGTTGTCCATTGCAGTGCTGGAGTTGGTAGAACGGGCGCCTACATAATAATTGATGCGATGCTTGAACAGGCAAAGCATCAACAGAGGTTGGATATCTTCAGTTACTTGCAAACCATCAGAGAAGACAGACCTTTCATGGTGCAGACAAAAGATCAATACATATTTGTACACATGGCTGTGTACGAGGCGCTATCATGTGGCAACACGGAAATTGAAGTTCAAAACCTGAACACCGCCTTGAAGAATCTCTCAACTGTAGACAAACACAAGAACAAAACCGGCTTTGCAATGGAATTTCAGCGTTTAAGAGTTCTTACACAAAAGAGTGAAGACATACAAGAGAAATGTACAATTGAAATGAAAGAGGAAAACTTCCATAAAAACAGATATTCAGATGTCGTTACTGTGGATGAGAGACGTGTTATTCTAAATGTAAATGGTGAAGCCGAGGGAGATTACATCAACGCTTCATTTGTAGATACTTACAGAGATCGTAACGCGTTCATTGTGACACAAGCCCCTTTGGAAAACACGGTGGTAGATTTCTGGAGAATGGTGATGGACTACGACATAGGGACCATTGTCATGCTCAACACCTTACAAGAAGGACACGAGACTTTCCCTCAATATTGGCCTGAACATGTACAAGAACCGATGATATGTGGAAGCATTACAGTTATGTTGCTGAAGATGGAAGTTTTGGATGAAGTAGTTGCACGTGCATTTCATGTGATGGATTCTGTGAAAAGCCTCTCCGTGCTTCACTTACAGCATACAAGATGGAGTGATAAATGCATTCCTTCCGAACCACAGAGCGTATTAAACTTACTTAACGAAGTAGAGAGATCACAGCAAACACGAGCTGGAGGTTCACCAATACTAGTTCATTGCAGCAACGGCGTTGGTCGCAGTGGTACATTCTGTGCCATCGCCTCAACACTTGATCGTGTCAAGCAAGAACAAGTACTGGACGTCTTTCAGACCGTTAAGTCTATTCGTACTAACAGACCTGGAGCGGTGCAGACTTTGATTCAATACAAGTTCTGCTACACCATTATCAACGAGTATCTAGACTCATTCAGTGACTATAGTAATTTTAAAGAATAA

Transcript

gene11590.t3

GGACTGTATATATATATATATGGTACACAGCTATGGTACACAGCTAGGCAGGGCAGAGTAGGTCAATACAGGTACACATTACATGCAGTCAGTCAGTTGTAGACAAAAGTTAGAATTTTTCATCAGAATTCAAAGATTCAAGAAGCTGACAGGAGACGCCAAAAAGTAAGTACAAAATGAATAAACGGCATATTAATTACTGGCTGCCTTGAAAATAGGAATTTAATCTTCGAGTTTTAAAACAATAGTTCATGATCATGAGTGCGCACGAAGCGAGCGAGTAAAATATTGTTTTGATGATAATAAACCTTCAAGCTGCATGATTGCCATATATAGTTTGAAAATAAAAACTTGTAAAACCTCGTATTGGTTTTCGTCGCTATGTCGACAAGACAAAGATCCATGAAATCAGTTTTACATCGTGAGATGAATTTTTTTCTCATCTTCGCTTTCAACGTCTCACTACCTCAACAAATTCGCCCCCATTCTCCACGCTTCCACATTCTAACAACTCGTCTATATTTAGTATGGAGGGAAAAGTCGCGGACTGCTCGCAGTCTCAGCTACCCTTCTCTTGCATTAGCATTCTCCTGTTCTTCACTGAGCGAGTTCATTCTCTCGTCAATCACTTTTACATGGCTCGCTATTTTACGTGGCAGCAGACAAGTGACGAGAAAAGCGAAAATGAAGCCATCAAAATCTTCACAAAGTTGTTTAAAGCTACCAAACTACCAAGTGTTCAAGATGAATGCCCTGCCATGGAAGACCCTGGTTTTGGTATTCTGTGTCTTGGTTTTAATGCAAGGAGTAACGTCTGCAGAAACAGGTTGCGTAAAAAGATCTCTTATTGGAGAAAACAATCTAAAGATTCCTGACAGCAGTTTCACAGCCTCCTCGTATTTATACGAGCGGACAGCGGACAGGCGTTACCGACCAAGTAATGCAAGGCTCAATGGTCAATGGGGATGGTCACCAAGGGATAATTACGATAACAGCGATTATCTACAGATTGACCTTGGTGCTGCACGAGTTATTACTGCTGTAGCAACACAAGGCAACGGTGGTAGAATACCAGGTAAATCAAACTTTACTGAATGGGTGAAATCTTACAGACTGAAGTTTACAAGTGACACCACCTCTAAGTGGGAAGATTATGGAACGACAATATGGATCAAAACGTGGCATTACAACATGAACAGCGACAAAGTTGAACGTCATGATTTTACAACTCCTCGAACAGCAAGATACATCAGATTCATACCAGAGAGCTATGAGGAGTGCAAGACGATGAGAGTCAACGTTTATGTCATCGATCAAGATCCACCACGTGTAACTGCCAAACCCTGTGAACGGTCCATACAGCTAACATGGTCCTTTAAACTGTGTGCAAGCATACCACCCAACTTTCAGAATACTGGATTTATTGTTAATGTGACCAACAAGGGAGTGTTTAACGTTGGGCGTGTCACAAGTTATAACATCACAGATCTACAGCCATACACTGACTATGAAGTACGAGTAAAACCTGTAGAATATGAACTGTGGAGTCAAGCGATCACAATCAAAACTACTGTAGCAGTTCCACAAGTTAAGCCCCACATCACCAGTAACGTGGCAAATTCTTCAACATCCATAGTCCTCGAATGGAAGCTGGAAAAGCCTCAATTGATCCACGGATCACTGAAAGGTTACATAATAAAATACACAGCACAAAGTGTACCAACAAAAACAGTGGACGTGGGTGTGGTCAACACGTGGACACTGATGTCACTAGAAAAATACACGTGGTACACAATAACGGTGTCAGTCAAGAACACCAAGTACGTTGGTCCACGTAGTGGAGAGGCGGAGATAAGGACGATGGAAGACGCACCATCTTCTCCAGTAAAGGTCCGTCACTCATTCATACCTGTCAAAGGATACGTTGGACCAGCCCTTGAGATCACATGGGACAAGCCACACAATCAGAATGGTTTCATCAGAAAATACACCCTGCTATACTACTACAATAACACCATGAAAGATACAACACAAAGGATTGATATCAACGCTTCCATTGGTCGTAGCATTGTCGTGAATATAACAATGATGGGCATGTTGTCATACAATATTAGTGCGTCTACTATAGTAGAAGGGCCATACAGTGATGGACATGTGGTCATTCCTGCTTATCCACCATGGGCTGCACCAACAAATGTCTCTGTTGTGTTCTTAAACACCACATCCATTGATACATTTTGGCATCCTATTTCTGATGAGAATAAGAACTGTGACATCACCAAATACGAGGTGAACTTGACGTTATATGATGAAACAAGATGTAAAGAAGATATCCTGATAAAAAGAAGCAGTACAGTACACGTTGAAGGAAAGAATGTGCACGCTATGTTGCAAGGGTTTTTAGCGTGTTCAGAGTATGGTATATCAGTGAGAGGCTATACAATGGCTGGACCAGGACCTTATAGTGAAACTGTTTACTTTACTACACATGAAAAACCAACAGTTCACGTGCACGAAGAAAGGACAGCAACTTCAAAACGTGGTTTAATAATTGGACTTGTGGTAGCGCTTCTTCTACTGATTATTTTTTTAGTTGGACTCGTAGCTGTTCTCATAAAATGGCGCCGCAAACGTCAGTACAAGGATTTAGCGATCCCGTTAAAAGCTTCTGATGCGCAATCTACTTCCAGCTGTAGAGGAACAAACAACCAAACTAACCCAGATGATGATGACGAAGATGAAGCTAATTACGTGAACGTTATTGACATATGTCCACTCTCAGTGTTTGATATGAAATTCTTGACGCCCAATGGGAACATTGACGAATGCAGTCTTAAACAGGAATTTAAGAACATACCAACGTCACATGAATATGAATGTACCCATGCAGAAAAACCTTCCAACAAAAAGAAAAATCGATACAAGAACATTGCTACATACGATCACTCTCGTGTTGTCCTGAAAGATGAGTACGAGTACAACGACACAGACTGTGATTACATCAATGCATCGTTTATACGCGGATATGACGGTTCACCGAGGACATACATAGCAACACAAGGCCCTTTACCCCAAACTGCTAAGGACTTTTGGCAAATGGTATGGCAGCAAAATACTGCAGCAGTCGTTATGCTAACAAACCTGGATGAACTGGGAAAGGAAAAGTGCCATCAATACTGGCCACAAAGAAGTGAACAATATGGAGACATAACGGTGACCAAACATCAAACACAAGTGTTTGCAGACTATGCTATACGAACTTTTCTCTTATCCAAGGCCGGCAAGACAAGCCACCGTGTACGTCAGTTCCATTTCACTGTGTGGCCAGACAAGGGAGTTCCTCAACATGCCACTGCAATACTGGCATTCAGGAGGAGAGTGCGTCAGGAAACTCCTGCCAATGCTGGTCCAACGGTTGTCCATTGCAGTGCTGGAGTTGGTAGAACGGGCGCCTACATAATAATTGATGCGATGCTTGAACAGGCAAAGCATCAACAGAGGTTGGATATCTTCAGTTACTTGCAAACCATCAGAGAAGACAGACCTTTCATGGTGCAGACAAAAGATCAATACATATTTGTACACATGGCTGTGTACGAGGCGCTATCATGTGGCAACACGGAAATTGAAGTTCAAAACCTGAACACCGCCTTGAAGAATCTCTCAACTGTAGACAAACACAAGAACAAAACCGGCTTTGCAATGGAATTTCAGCGTTTAAGAGTTCTTACACAAAAGAGTGAAGACATACAAGAGAAATGTACAATTGAAATGAAAGAGGAAAACTTCCATAAAAACAGATATTCAGATGTCGTTACTGTGGATGAGAGACGTGTTATTCTAAATGTAAATGGTGAAGCCGAGGGAGATTACATCAACGCTTCATTTGTAGATACTTACAGAGATCGTAACGCGTTCATTGTGACACAAGCCCCTTTGGAAAACACGGTGGTAGATTTCTGGAGAATGGTGATGGACTACGACATAGGGACCATTGTCATGCTCAACACCTTACAAGAAGGACACGAGACTTTCCCTCAATATTGGCCTGAACATGTACAAGAACCGATGATATGTGGAAGCATTACAGTTATGTTGCTGAAGATGGAAGTTTTGGATGAAGTAGTTGCACGTGCATTTCATGTGATGGATTCTGTGAAAAGCCTCTCCGTGCTTCACTTACAGCATACAAGATGGAGTGATAAATGCATTCCTTCCGAACCACAGAGCGTATTAAACTTACTTAACGAAGTAGAGAGATCACAGCAAACACGAGCTGGAGGTTCACCAATACTAGTTCATTGCAGCAACGGCGTTGGTCGCAGTGGTACATTCTGTGCCATCGCCTCAACACTTGATCGTGTCAAGCAAGAACAAGTACTGGACGTCTTTCAGACCGTTAAGTCTATTCGTACTAACAGACCTGGAGCGGTGCAGACTTTGATTCAATACAAGTTCTGCTACACCATTATCAACGAGTATCTAGACTCATTCAGTGACTATAGTAATTTTAAAGAATAATCAAACATTTACAATATTTTATATTTAGCCTCCTCCGCAGACAACTCTTGGGCTTCCTCGCTCTTACCCAATAAAGGAGTAGCCTGCAGAGGAGACTAGACAAGAATCTGGGAAGTATTTAGTAGCAAGGAGAAGGTAAGACAAGTGTAAGGAACGCACCTGTTCAACCTTTACCGAGGCACACAGCATTATTAGTTTTCTGACACACTCGATTTCCATAATTTTGCTCTCGGCATTCGCTGATATAATGCAAAGAGAAAACAAAGAGTTTAGATAACGGTCAGTACTATGTTTCAAATAGTGGATAAATGCAGGGAAATAGAAGCAATATCTTACTTGCACTGTTATACAAAATAAATTGCGTTAGCAATCGTTTTAATGATCAAGGTAATTTTTAATGTTCTCCAGTTAAAGACGAGAGTTTAAAACCATTCGTTATGTCGCTATCTTAGTTTCTTAGTAGGCATTTGGGAAATAAACCAAACAGTAGCAGACTAATAATTACTGACCATTAACAAAACCCTTTCTTTTCACTCTGCATTATTATCAACGAATGCCGTGAGCAAAATTTTGGAAATCGAATTTGTCAGAAAAATGGCGGACTTTTTTTTAAGCAGGGAAATTATCGTGAACGGTCAGTAATTATAATATAGATAATTACCTCGGCAACACAGCGTTGTTAGGTAATATTGCAGCCAGCCGAGGACGCACTTGATCGACACGTGAAAAAGGTAGTACAATTGCATTGCTTTCTTTTGTTTTGTTTCGACTATTAGTTACTAACCACTTTATTTCACG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18433	Receptor-type tyrosine-protein phosphatase alpha OS=Homo sapiens OX=9606 GN=PTPRA PE=1 SV=3
Q03348	Receptor-type tyrosine-protein phosphatase alpha OS=Rattus norvegicus OX=10116 GN=Ptpra PE=1 SV=1
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000057 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR050348 all species →	Family	Protein-Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134 all species →	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene11590.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.