Gene detail

Detailed information of gene12048.t1 in Actinoscyphia liui

Genomic Location: chr3:43923648...43956859
NR annotation: XP_020896126.1, uncharacterized protein LOC110235048 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene12048.t1

ATCATTCTAGACCTACCTCAAATCTGATTTTACCACGTTTTAGGATTCACAGATCTAGCGCGCTTCAGGAAAAAGGAATCCGATCCAGACAAGCATAAAGAGATTACAGGTGGCGATTAATCAGCGAGAGTTTAGACTCGTGGAAGGCGACTGTCAAGTGGACGAATGTAAATATATACACTGTTTACTGGCTTCCTTGCAAACATCACAGCGTTTGAAGAATGGCGAATATGGGGCAGTTTTTGCAATAACAACGAAAGTAAACAGGTGACCGGCGAAGATGGATATTCTTGTCATCACTATACTCAGTATAGTCGCCGGCATACTACTGGCAACAATAGCAGCTACAGGGATCTACTACGCCATACGGACCAGGAAAGATAACCAGAAGGTAAAAGATGGCGGTCGTAAAAAGAAACTAGCCCTTCCCCACGACGACTCTTTCGTAGTCTACCATGACGAATCGATGGTCAATATTGAAAGTATCGCGGTTCAACCGGAGACGCGTCGGCCGATACTCGGTCCCGACGATGTTTACCCGCCTGTGAAAGAAGACGAGCAGGATGACATCTTGTTGGAAAGTTTAGAGATGGACTACACCTCGAGTGGTGCCCTGCCTCCGGATGAAATGGTAGAACGACGAGGATCTTTAGAGTTCTTGCTGCACTTTTATCAACTAAGCTCGACTTTGACCTTGACCTTGGTACGCCTATCGGAGTTGCCGAGAAGACTTGACACCAATCACTCCCCAGACCCCGTGGTCGAGCTGGAAGTGAAATATGGCCACGACGGTAAAGTCAAGTCTGAGACTTACCAAAACACAACCAACCCTCACATGTACGAAAGCTTCCGGTTTGAGATCCCGGTCAATGAGCTTGGGAACCAGACACTCTGCTTCCGGGTAACAGACATGATGGAAACCGGGATCCCTGAACCAAAACCCCCTACCCCACCCCCACCAATTAAAAGCAGAAAAAAACAGCCGCCTCCACCTCCTCCTCCCCCACCACCACCTCCACCGTCTCCAGCTCTTATAGGTATCGTCACCATACCTTTAGCCAGCGTCCCAATGAAGAAGTTATTGTCTGACTCAGAGATTACTATTGTGCGTGATATCATCAAGTTACGAAGGAAGACCCGCCAATTAGTTGAGATTGCTGACAGCACTGCCGGGGATGCAGTTTTATCGACCGCTACTGAGGAGGAAGGTCTGGAATCTTTTGATATCGAGGATGTAATGACGGCTGAATCGAGTGCAGACAATACATCGGAGGCCACAGGAACAGACGAACTAGAGAAGAGCCAGAGCGAATCAATAGAGGAAGTGAGTGATGATGCTGCAGCACCTCTAGTCAGACCGGGAGTCACTTTTGAAACGGATGAAGTCGGGCAAGTTGGTCAAATGCTTCTGCTGTCTTTAGCGTATTGGAAACCATCAGAGAAGCTAACGGTTGTAGTGATGAAGGCAAGGAACCTTAAAATTATTGACAAGAATAGAAAACCAGACCCATTCGTGAAAGTGTACATCATGATGGGTGCCAAGAGATTAAAGAAAAAGAGAACAGTGGTGAAAAAGCGGGAGTTAAGCCCAGTATGGAACGAAGCATTTAGTTTCAACATCCCACACCGAATACTCCATCGAGTAAGCGTCATGATACTAATCAAACATCATTCTGAGAGGGGTAGGGAGAGGCTGCTTGGTAAGCTTATGATTGGCGCAAGTTCAACAGATGAAGCAGTGGATCACTGGAATGCGATGTGCTCGTCTGGAAAATCGGTGGCACGCTGGCATCATCTTATAGAGGAAAAGTAAATCTTAGACTTTTGAACTCGTGTTACAACATGTGGGATTGCAAGCGATGTTGCACGTAATGCATCAATACTCCAGTTTCGAGTTCTGTGTTGCTCAGTGTTAGCCTCGATTGCGCGTAAAATATTACAAAATTTGCATTGTCCATTACTTTTCCACGGGCTGTCATCTCGACATTACTGCTTATGGGGTGGGGATGGGGGAATAATTGTGCCCAATGTTAAACCATGTGTACGGACTTTAATCACAATCTCGTTTATAAAGGGTTTTCCAAAATAGTAGTTAACATTGGAAGATAATTCACTATCCTCCGCGCAATTACCCTAGTCCTAGAGGCTCTATAAAACGAGGCGAAGGCGAGAGGTCGCGAGACGGAGACATTTATAAAGGCTCTGAAACCAGTGGTAAGGCGCAGTAGCAACTGACTCCATAGGTAAAGCGATGAGTAAAGCGATGTTTTTTCGAGTGAATTCAACTTGGAATTCACGAGTCGATCAATGCATTTTCCTTGAATTCCATAGCATTTCAAAATATTAGTGATTTATCAGCTAAAAACAAGATCAGAACAACAACAAAACATCACGGGTTCCCTGTGTAACTAGGGTATTCCACATTAAATACCTTCTCATCTGTAGCCAATCAGCGCGCGATTTAGGTTAAAGCTATGGGATTCAAGGAAAATTCATCAAAGTTAACGATTCATTCAGAATATTGAATACTATATATGGGAGATAATCATATCAGATAAAGGGTACTGCGATTTAGATATATTTCTTAAATTTGTATCAATAGTCAATTAACATGTAATCTGTCGTGTCTGATAATTAAATTCATGTGTCAACCTTTGAAATTGTTGCGCGCAATGAATAAATTGCATCGTATGTCAACCTCTGAAATTGTTGCGCGCAATTAATTAATTCCATCGTGTGCCAACCTTTGCCAACTTGCAGGAGTAGAATCAAAATGTACTTTTGCACATTTGGCGCAACAATATTAGAGGGGATGTATTAGTGATTGCAATGGTAATATTGCGTGTTGCATTCCCCTCCTAAGTAGCCAACCTCAAAATGACTCCGTTGGATGCTAGACTGCAGAATAGTCCCTACTTTAGATAAGTACTTGGTGTATGCAACACTAACTGTATCAATATATATATATATGTTTCCTACTGTATTCTAAGATATATATATATATATGTGTATCAGTTGGTGTTGCATACACCAAGTAGTGACTCTACTTTTTGGCAAAACTCCGCTGGATGCGTGTTTCTTCGCGTCGACAAACTCCAACTTCAACTCTTCTCGAGGGAGTTTCGCGAAAAAGAAAGGACTATTTGCAGTTTAGTTGGACGTTCAGCTTTCATGCGTTTACTGTCCAGCCTACTCCAAACCATTTTATGGTTTTATTGAGAATTAATGCAGGAAATGTCTGTTTTTTTGAACTGTGTGTCGAGCCTGTCGGTTAATTTTGTTTACCAATACAATAATGAGACTGATTGTTACTTCTAATTACATCTTGTGTCGCGTCTTGTCAGACATGATTTTAACAATATTGTAGGTGAAGATGTACTTAATTGTTTAAAGCAGTAATAGGTGGGCATCCATGTCAATAAAGAAATTAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N9I0	Synaptotagmin-2 OS=Homo sapiens OX=9606 GN=SYT2 PE=1 SV=2
P46097	Synaptotagmin-2 OS=Mus musculus OX=10090 GN=Syt2 PE=1 SV=1
P29101	Synaptotagmin-2 OS=Rattus norvegicus OX=10116 GN=Syt2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009707 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10024 all species →	SYNAPTOTAGMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0001786 all species →	Molecular Function	phosphatidylserine binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0014059 all species →	Biological Process	regulation of dopamine secretion	Interproscan
GO:0017156 all species →	Biological Process	calcium-ion regulated exocytosis	Interproscan
GO:0017158 all species →	Biological Process	regulation of calcium ion-dependent exocytosis	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0048791 all species →	Biological Process	calcium ion-regulated exocytosis of neurotransmitter	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan
GO:0071277 all species →	Biological Process	cellular response to calcium ion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene12048.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.