Gene detail

Detailed information of gene12072.t1 in Actinoscyphia liui

Genomic Location: chr3:44451568...44473114
NR annotation: XP_020906883.1, rho guanine nucleotide exchange factor scd1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene12072.t1

ATGGCCCAGCAAGATTTATCTTACGTTTTCCAGCCAGTCATTCATGAGCCAATTTCCAGACCTGACGTCACTAGTCTCAGCCCTACAGAATGCAGACCAGTCCCTAATATAGAGACAGGACATGATGCATGTTTGTCCCCAATGTCAATGCTGGAAGAAGAGAAGGATGCTATGGCTAATATTGAAGAAGCTGATAAATGCAGAATTGATCATCCTAGAAAAGCTATGTCATTGTATTTGAAGGCTGGAAAAGCTCTTGTTCTGTGCAACCAAGCCGACACCGCTTTAAAGTGTTTTCGGTCCCTCATTCTTCTAGCTACTGATCAGTTATCAAAAGTACTCAACGAGAAACAAAAACTCAACAAAATACGACGCTCTGGGAGCAACATCGAAACTACAGAGAGAAAGGAAAAAAAGGCAAAAGTTTCCAGAGCCAAAAGCTTCGATATTCCTTCAAAATCAACCGAACAAAGACAGCCTATATTTATTCAAAGAACTTGTAAATCCGTCCTTGAAAACCCTGAAGAAACAAGAGAAGAAAAAGTCGAAGAAACAGTCGTCGTCGTCGTCGTCGAAGAAGCCCCTCAAGAAAATCACTGCGAATTTGTTGCGGTGGAAGAAATCGAAAACGTCGAAGAAAACACTGCAAACGAGGTCGTCGTGAACTGCGACAACCAAGAAATGTTAATTCCCGAACAAGTTTGTATATGCGAGCCGCTAATGGAGGTCGGCTGTCAAAATGAACTGCCCGTGTTCGCTGTCACAGAAGTAACAGACGTAACGGAAATCGAAGAAATGGCAATGGCTTGTGAAACGACCGATACAGTTTGTGAAGTGAATTGTTTTGAAACTGAAGCCTCGTTAGAATTTGAGGTCGCTGTGGTAGAGTCGTTGGACGACTCTGCAAGTACTCATAGTTCTGTTAGTTCAGAGGATATTGTAAAGACTATGAACGCTGAGATCGTTATAGAGTGTGACGAAGTTATAGTGTGCACAGAAGAAGTCCCCTCGAATTCACAACAAAATGCTTATATCCGACGAGGATATGTAGTCAGCGAACTCATCGACACAGAACAGAATTATATCCGTGACCTTGGCGATGTAATTAAGGGTTACATGGCTTCCCTATCTAAAGAATCAAACGTTCCAAGCGAATTAAAAGGAAAAGAAAAAGCTATTTTTTCTAATATTCATGATATACACAAGTGGCATTCGTCGAATTTTTTTCAATATCTAAAAGAATGTGAAGACAATCCATCAAAGTTAGGACAAGTTTTTATATCAGCCGAATCTAAACTTGAAGAACTCTACACAATTTACTGCAGATCAAAACCCAAGTCGGACCTTCACGTTCTTCCATACAAAGACACTTTCTTTAAAGATTGTCGAAAAAAACTTGGTCATCGCCTACAGCTTCCTGACTACCTGATAAAACCTGTTCAACGAATCACTAAATATCAGCTTATGTTAAGGGACATTCTAAAGTTTACTGAAAGAGCAGGAGAGGACGGCAGTGAAATACAGCAAGCCATTGATGTGGCATTGAGGATTCTGAAACGAACCAATGATATGATAGCTGTTGCTATGATACAAGGCTATGACGGCAAACCTGATGAGACAGGAGAATTACTGCTTAGGGAAACTCTCGAAGTCGGCGAGGGAAAATATCGACAGAAAGTGAAAGAACGAACGGTCTTTCTATTTGAAAGGGTAATGGTCGTAACAGAATCTATAGAAGAAGGAGGTGTAACACAACTTCGATTTCAGAACACAATTAAGACTCATGGCCTGGGAATCACGGAGACTGTCGACAGTGACCCGTGCAAGTGGGCTGCTTGGCTGCGTAAAAGAGGCAATGCAGAAATTTACGTCTTTAAGGCGCCATCAACAGAAATCAAGGAAATTTGGATGAAAAACATCAAAGAATGCAGCCTGAAAAAGAAGGCTCCGGGATTATTGAAATCTTTGTATCGTTCGAGAACGTTTAAAAGAGAAGAGTCGGAAACTAAAGAAATACTTGATTCATTAGAAGATGACTCTAACAAGCACAATAGCAGCAACAGAAAATCGTCCAAGCGAAAACCATCGAAAGTCATGTCTAGAAAGAAGACTAAAAGTCGAGACAGTGTGATCTCTGACAGACTCAAAGAAAGTATCATGAAATTTCGCGCCGAAGAACATATGTTATCTGTGGAAGAAGCGCCGGAAGTGACGTATGCAGAACCTCCAAATAGTTTATCGACTTTATCGCCTGACAGCGCTCTGCCCCAGTCTCCTGGGTCCGCGGACGCGTCAGATCAAGTGTCGTTTATTGAACAACGAGCCAAGATAGAAGCAGAGGAGAACCAACTGAACAAAGTGTTGATGTTGACGCGTTTAATCACAGCGAGGTTATTACAGACAAAAAATGCATCACAGTCGCTGGAATTGTACGGTGATGCCATCGGTAGCGTTCTGCCACAAGACGAACTGAAACGATATCAAGAGACAATCTTGGCACGTGACAGTCTACTTCAACACTGTACCGAGGTTTACGAAAATTGGCGCAGAGAAAACCTGTTTGAAAGTGCTGACATTGAAGAGCGGTACATCTCGATGACAAGCCTTCTTAGCGAGACTGCAGGGTTTTGCAGTGTCCACAAAGGCAATTCTTGGTCTGTGGTTCTGTATTCAGTGTGCGCAGTGGCTGGAGGTCGCGAACAAAAATGGCGGGACTCTTCCCAAGCATTTTATCGTTTATCACTCGTCTACAGTGCATTACAAGCCACTAATTGTGCAGTGGATAGTTTAGTGGATGCTCATTGGATGTCGTGTCAAGCAGGAGACTATCAAGGAGCTGTTAACTTTTTCTATAACGCGTTTATACGATCTCTAGCCTGCAGGGATTTGATGAGGTGTTTGCGGTTCGAACAACAAGGGATGTTTCTGATTGAAAGAGTGGCACCTAAAATTAAAGATAGCAATAATAACCACAAGGAAGAAATGACCGATGACAAGGAATCTCGCGGGCTCGTATCTCCCCAGCACCTTACATTCCTCATTAACATGAGCCGAGCAACAAGACGGAAAGATTGGGCCTGGTTTGAATTTGGCGAGTCTGAACTTAATGTGATTATCAGTACCAGCAGTGGACGACAAGCAGACGCCATTCTGTCAGCGGTATTTCACAAATTAAAAAGACTTATCGTCGGAGATTCCATGTCGTCATGA

Transcript

gene12072.t1

CTGACTGTCTTCCTAGGGCCGTGAGGTAGAATTACTAATACAAGAAGCCACACAATGGCTGACATACATCATACTTGCGGGGAGCCGGAATGAAAATCTCCTTAGCACTGGTCTAGTGGGAGGGAAGCCTTGGAAAAGTACTCTATTGTGTTGAAGTCAAACAGACGACTGGACTTCAAAATGGCCCAGCAAGATTTATCTTACGTTTTCCAGCCAGTCATTCATGAGCCAATTTCCAGACCTGACGTCACTAGTCTCAGCCCTACAGAATGCAGACCAGTCCCTAATATAGAGACAGGACATGATGCATGTTTGTCCCCAATGTCAATGCTGGAAGAAGAGAAGGATGCTATGGCTAATATTGAAGAAGCTGATAAATGCAGAATTGATCATCCTAGAAAAGCTATGTCATTGTATTTGAAGGCTGGAAAAGCTCTTGTTCTGTGCAACCAAGCCGACACCGCTTTAAAGTGTTTTCGGTCCCTCATTCTTCTAGCTACTGATCAGTTATCAAAAGTACTCAACGAGAAACAAAAACTCAACAAAATACGACGCTCTGGGAGCAACATCGAAACTACAGAGAGAAAGGAAAAAAAGGCAAAAGTTTCCAGAGCCAAAAGCTTCGATATTCCTTCAAAATCAACCGAACAAAGACAGCCTATATTTATTCAAAGAACTTGTAAATCCGTCCTTGAAAACCCTGAAGAAACAAGAGAAGAAAAAGTCGAAGAAACAGTCGTCGTCGTCGTCGTCGAAGAAGCCCCTCAAGAAAATCACTGCGAATTTGTTGCGGTGGAAGAAATCGAAAACGTCGAAGAAAACACTGCAAACGAGGTCGTCGTGAACTGCGACAACCAAGAAATGTTAATTCCCGAACAAGTTTGTATATGCGAGCCGCTAATGGAGGTCGGCTGTCAAAATGAACTGCCCGTGTTCGCTGTCACAGAAGTAACAGACGTAACGGAAATCGAAGAAATGGCAATGGCTTGTGAAACGACCGATACAGTTTGTGAAGTGAATTGTTTTGAAACTGAAGCCTCGTTAGAATTTGAGGTCGCTGTGGTAGAGTCGTTGGACGACTCTGCAAGTACTCATAGTTCTGTTAGTTCAGAGGATATTGTAAAGACTATGAACGCTGAGATCGTTATAGAGTGTGACGAAGTTATAGTGTGCACAGAAGAAGTCCCCTCGAATTCACAACAAAATGCTTATATCCGACGAGGATATGTAGTCAGCGAACTCATCGACACAGAACAGAATTATATCCGTGACCTTGGCGATGTAATTAAGGGTTACATGGCTTCCCTATCTAAAGAATCAAACGTTCCAAGCGAATTAAAAGGAAAAGAAAAAGCTATTTTTTCTAATATTCATGATATACACAAGTGGCATTCGTCGAATTTTTTTCAATATCTAAAAGAATGTGAAGACAATCCATCAAAGTTAGGACAAGTTTTTATATCAGCCGAATCTAAACTTGAAGAACTCTACACAATTTACTGCAGATCAAAACCCAAGTCGGACCTTCACGTTCTTCCATACAAAGACACTTTCTTTAAAGATTGTCGAAAAAAACTTGGTCATCGCCTACAGCTTCCTGACTACCTGATAAAACCTGTTCAACGAATCACTAAATATCAGCTTATGTTAAGGGACATTCTAAAGTTTACTGAAAGAGCAGGAGAGGACGGCAGTGAAATACAGCAAGCCATTGATGTGGCATTGAGGATTCTGAAACGAACCAATGATATGATAGCTGTTGCTATGATACAAGGCTATGACGGCAAACCTGATGAGACAGGAGAATTACTGCTTAGGGAAACTCTCGAAGTCGGCGAGGGAAAATATCGACAGAAAGTGAAAGAACGAACGGTCTTTCTATTTGAAAGGGTAATGGTCGTAACAGAATCTATAGAAGAAGGAGGTGTAACACAACTTCGATTTCAGAACACAATTAAGACTCATGGCCTGGGAATCACGGAGACTGTCGACAGTGACCCGTGCAAGTGGGCTGCTTGGCTGCGTAAAAGAGGCAATGCAGAAATTTACGTCTTTAAGGCGCCATCAACAGAAATCAAGGAAATTTGGATGAAAAACATCAAAGAATGCAGCCTGAAAAAGAAGGCTCCGGGATTATTGAAATCTTTGTATCGTTCGAGAACGTTTAAAAGAGAAGAGTCGGAAACTAAAGAAATACTTGATTCATTAGAAGATGACTCTAACAAGCACAATAGCAGCAACAGAAAATCGTCCAAGCGAAAACCATCGAAAGTCATGTCTAGAAAGAAGACTAAAAGTCGAGACAGTGTGATCTCTGACAGACTCAAAGAAAGTATCATGAAATTTCGCGCCGAAGAACATATGTTATCTGTGGAAGAAGCGCCGGAAGTGACGTATGCAGAACCTCCAAATAGTTTATCGACTTTATCGCCTGACAGCGCTCTGCCCCAGTCTCCTGGGTCCGCGGACGCGTCAGATCAAGTGTCGTTTATTGAACAACGAGCCAAGATAGAAGCAGAGGAGAACCAACTGAACAAAGTGTTGATGTTGACGCGTTTAATCACAGCGAGGTTATTACAGACAAAAAATGCATCACAGTCGCTGGAATTGTACGGTGATGCCATCGGTAGCGTTCTGCCACAAGACGAACTGAAACGATATCAAGAGACAATCTTGGCACGTGACAGTCTACTTCAACACTGTACCGAGGTTTACGAAAATTGGCGCAGAGAAAACCTGTTTGAAAGTGCTGACATTGAAGAGCGGTACATCTCGATGACAAGCCTTCTTAGCGAGACTGCAGGGTTTTGCAGTGTCCACAAAGGCAATTCTTGGTCTGTGGTTCTGTATTCAGTGTGCGCAGTGGCTGGAGGTCGCGAACAAAAATGGCGGGACTCTTCCCAAGCATTTTATCGTTTATCACTCGTCTACAGTGCATTACAAGCCACTAATTGTGCAGTGGATAGTTTAGTGGATGCTCATTGGATGTCGTGTCAAGCAGGAGACTATCAAGGAGCTGTTAACTTTTTCTATAACGCGTTTATACGATCTCTAGCCTGCAGGGATTTGATGAGGTGTTTGCGGTTCGAACAACAAGGGATGTTTCTGATTGAAAGAGTGGCACCTAAAATTAAAGATAGCAATAATAACCACAAGGAAGAAATGACCGATGACAAGGAATCTCGCGGGCTCGTATCTCCCCAGCACCTTACATTCCTCATTAACATGAGCCGAGCAACAAGACGGAAAGATTGGGCCTGGTTTGAATTTGGCGAGTCTGAACTTAATGTGATTATCAGTACCAGCAGTGGACGACAAGCAGACGCCATTCTGTCAGCGGTATTTCACAAATTAAAAAGACTTATCGTCGGAGATTCCATGTCGTCATGACAACAGCCTTAGGCCAACCGAAATCGTATAGACACCTCGCTTCCTGGTTCTCAAACGTTTAATTTGTGAAATAATGTAATTATGGTAAGGCAACTGAAAACGAGCATAATTTGGATCGATAATGATCCAGATTAGTCATCTAATCGATACGACTCCGAATTTCTCTAAACTATTTACAAGCCCTTCGATGTCTCACTTTGAAATTTCCCTTTCCATGTGCACTGTGTATGGTCTGTATGTAAAATAAAGCCGAAAAAGGCTAGAATCGACAAAATATATGTTAGCCAACAACGTAATTTAAGCTCTTTGAACAATAACAGATGGAATATAGAGTTTATTAAAAAGTCTTTGCATCATTTACATTTTAATAGACTTTAACTCCAAAGAAACAAAGTCTTAGGTGTCCCTTTCATAGGTAGACTGCAAAATAGTCCCTACTTTTTCGCCGAAATGGAGTTTGTCCGCCCGGGAAGAAAGACGCGAGGGAATGAGGCGAGAAGGGGAGAGACGCCAGGACAGATTGCGATAGCCCTTACTTTTGGTGTCTCTTCCCCTTCTCGCCTCATTCTCCTCCCGTTATTCTTCGTCGGCTGACAAACCCCAATTCAACATCCCCCCCTATTCTCGGCGGAGTTTCGCGAAAAAGTAGGGACTGTTTTGCAGTCTATTTCTTAGGCGAGTTGAGCCTAAGATTAGGATGACTCGAGATTCTAAATGTTTTGTAAATTAGCAAGTTTTGAATGTTACGTATACAATGCTATTTGTCGATGGCGACCCTAAATTATCTATAGAATAGTAAATATTATTACTGACAATTAAAGTATTTTTATGAATAAAATACCCTTATTAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0KL02	Triple functional domain protein OS=Mus musculus OX=10090 GN=Trio PE=1 SV=3
F1M0Z1	Triple functional domain protein OS=Rattus norvegicus OX=10116 GN=Trio PE=1 SV=4
O75962	Triple functional domain protein OS=Homo sapiens OX=9606 GN=TRIO PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005526 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051336 all species →	Family	Rho GTPase-activating Guanine Nucleotide Exchange Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22826 all species →	RHO GUANINE EXCHANGE FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene12072.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.